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Cited In for PubMed (Select 12167157)


Recent advances in the genome-wide study of DNA replication origins in yeast.

Peng C, Luo H, Zhang X, Gao F.

Front Microbiol. 2015 Feb 19;6:117. doi: 10.3389/fmicb.2015.00117. eCollection 2015.


Genome-wide chromatin footprinting reveals changes in replication origin architecture induced by pre-RC assembly.

Belsky JA, MacAlpine HK, Lubelsky Y, Hartemink AJ, MacAlpine DM.

Genes Dev. 2015 Jan 15;29(2):212-24. doi: 10.1101/gad.247924.114.


Initiation of DNA replication from non-canonical sites on an origin-depleted chromosome.

Bogenschutz NL, Rodriguez J, Tsukiyama T.

PLoS One. 2014 Dec 8;9(12):e114545. doi: 10.1371/journal.pone.0114545. eCollection 2014.


Increased and imbalanced dNTP pools symmetrically promote both leading and lagging strand replication infidelity.

Buckland RJ, Watt DL, Chittoor B, Nilsson AK, Kunkel TA, Chabes A.

PLoS Genet. 2014 Dec 4;10(12):e1004846. doi: 10.1371/journal.pgen.1004846. eCollection 2014 Dec.


Checkpoint-independent scaling of the Saccharomyces cerevisiae DNA replication program.

Gispan A, Carmi M, Barkai N.

BMC Biol. 2014 Oct 7;12:79. doi: 10.1186/s12915-014-0079-z.


Different nucleosomal architectures at early and late replicating origins in Saccharomyces cerevisiae.

Soriano I, Morafraile EC, Vázquez E, Antequera F, Segurado M.

BMC Genomics. 2014 Sep 13;15:791. doi: 10.1186/1471-2164-15-791.


Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

Lujan SA, Clausen AR, Clark AB, MacAlpine HK, MacAlpine DM, Malc EP, Mieczkowski PA, Burkholder AB, Fargo DC, Gordenin DA, Kunkel TA.

Genome Res. 2014 Nov;24(11):1751-64. doi: 10.1101/gr.178335.114. Epub 2014 Sep 12.


Temporospatial coordination of meiotic DNA replication and recombination via DDK recruitment to replisomes.

Murakami H, Keeney S.

Cell. 2014 Aug 14;158(4):861-73. doi: 10.1016/j.cell.2014.06.028. Erratum in: Cell. 2014 Oct 23;159(3):697-8.


High resolution mapping of modified DNA nucleobases using excision repair enzymes.

Bryan DS, Ransom M, Adane B, York K, Hesselberth JR.

Genome Res. 2014 Sep;24(9):1534-42. doi: 10.1101/gr.174052.114. Epub 2014 Jul 11.


Analysis of replication timing using synchronized budding yeast cultures.

Peng J, Raghuraman MK, Feng W.

Methods Mol Biol. 2014;1170:477-99. doi: 10.1007/978-1-4939-0888-2_26.


The CDK regulators Cdh1 and Sic1 promote efficient usage of DNA replication origins to prevent chromosomal instability at a chromosome arm.

Ayuda-Durán P, Devesa F, Gomes F, Sequeira-Mendes J, Avila-Zarza C, Gómez M, Calzada A.

Nucleic Acids Res. 2014 Jun;42(11):7057-68. doi: 10.1093/nar/gku313. Epub 2014 Apr 21.


High-resolution replication profiles define the stochastic nature of genome replication initiation and termination.

Hawkins M, Retkute R, Müller CA, Saner N, Tanaka TU, de Moura AP, Nieduszynski CA.

Cell Rep. 2013 Nov 27;5(4):1132-41. doi: 10.1016/j.celrep.2013.10.014. Epub 2013 Nov 7.


The dynamics of genome replication using deep sequencing.

Müller CA, Hawkins M, Retkute R, Malla S, Wilson R, Blythe MJ, Nakato R, Komata M, Shirahige K, de Moura AP, Nieduszynski CA.

Nucleic Acids Res. 2014 Jan;42(1):e3. doi: 10.1093/nar/gkt878. Epub 2013 Oct 1.


A Link between ORC-origin binding mechanisms and origin activation time revealed in budding yeast.

Hoggard T, Shor E, Müller CA, Nieduszynski CA, Fox CA.

PLoS Genet. 2013;9(9):e1003798. doi: 10.1371/journal.pgen.1003798. Epub 2013 Sep 12.


Stochastic association of neighboring replicons creates replication factories in budding yeast.

Saner N, Karschau J, Natsume T, Gierlinski M, Retkute R, Hawkins M, Nieduszynski CA, Blow JJ, de Moura AP, Tanaka TU.

J Cell Biol. 2013 Sep 30;202(7):1001-12. doi: 10.1083/jcb.201306143. Epub 2013 Sep 23.


A DNA sequence element that advances replication origin activation time in Saccharomyces cerevisiae.

Pohl TJ, Kolor K, Fangman WL, Brewer BJ, Raghuraman MK.

G3 (Bethesda). 2013 Nov 6;3(11):1955-63. doi: 10.1534/g3.113.008250.


Quantitative, genome-wide analysis of eukaryotic replication initiation and termination.

McGuffee SR, Smith DJ, Whitehouse I.

Mol Cell. 2013 Apr 11;50(1):123-35. doi: 10.1016/j.molcel.2013.03.004. Epub 2013 Apr 4.


The spatiotemporal program of replication in the genome of Lachancea kluyveri.

Agier N, Romano OM, Touzain F, Cosentino Lagomarsino M, Fischer G.

Genome Biol Evol. 2013;5(2):370-88. doi: 10.1093/gbe/evt014.


Location, location, location: it's all in the timing for replication origins.

Aparicio OM.

Genes Dev. 2013 Jan 15;27(2):117-28. doi: 10.1101/gad.209999.112. Review.


The N-terminal 45-kDa domain of Dna2 endonuclease/helicase targets the enzyme to secondary structure DNA.

Lee CH, Lee M, Kang HJ, Kim DH, Kang YH, Bae SH, Seo YS.

J Biol Chem. 2013 Mar 29;288(13):9468-81. doi: 10.1074/jbc.M112.418715. Epub 2013 Jan 22.

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