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Results: 1 to 20 of 97

1.

msiDBN: A Method of Identifying Critical Proteins in Dynamic PPI Networks.

Zhang Y, Du N, Li K, Feng J, Jia K, Zhang A.

Biomed Res Int. 2014;2014:138410. doi: 10.1155/2014/138410. Epub 2014 Apr 2.

PMID:
24800204
[PubMed - in process]
Free PMC Article
2.

EDDY: a novel statistical gene set test method to detect differential genetic dependencies.

Jung S, Kim S.

Nucleic Acids Res. 2014 Apr;42(7):e60. doi: 10.1093/nar/gku099. Epub 2014 Feb 5.

PMID:
24500204
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Statistical analysis of differential gene expression relative to a fold change threshold on NanoString data of mouse odorant receptor genes.

Vaes E, Khan M, Mombaerts P.

BMC Bioinformatics. 2014 Feb 4;15:39. doi: 10.1186/1471-2105-15-39.

PMID:
24495268
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis of differentially expressed genes in colorectal adenocarcinoma with versus without metastasis by three-dimensional oligonucleotide microarray.

Moura Franco RM, Linhares MM, Lustosa SS, Silva ID, Souza NC, Matos D.

Int J Clin Exp Pathol. 2013 Dec 15;7(1):255-63. eCollection 2014.

PMID:
24427346
[PubMed - in process]
Free PMC Article
5.

Fold change rank ordering statistics: a new method for detecting differentially expressed genes.

Dembélé D, Kastner P.

BMC Bioinformatics. 2014 Jan 15;15:14. doi: 10.1186/1471-2105-15-14.

PMID:
24423217
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Analyzing kernel matrices for the identification of differentially expressed genes.

Xia XL, Xing H, Liu X.

PLoS One. 2013 Dec 9;8(12):e81683. doi: 10.1371/journal.pone.0081683. eCollection 2013.

PMID:
24349110
[PubMed - in process]
Free PMC Article
7.

Bioinformatic analysis of the membrane cofactor protein CD46 and microRNA expression in hepatocellular carcinoma.

Lu Z, Zhang C, Cui J, Song Q, Wang L, Kang J, Li P, Hu X, Song H, Yang J, Sun Y.

Oncol Rep. 2014 Feb;31(2):557-64. doi: 10.3892/or.2013.2877. Epub 2013 Nov 28.

PMID:
24297460
[PubMed - in process]
Free PMC Article
8.

Reducing the complexity of complex gene coexpression networks by coupling multiweighted labeling with topological analysis.

Benso A, Cornale P, Di Carlo S, Politano G, Savino A.

Biomed Res Int. 2013;2013:676328. doi: 10.1155/2013/676328. Epub 2013 Oct 7.

PMID:
24222912
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Identification of potential biomarkers from microarray experiments using multiple criteria optimization.

Sánchez-Peña ML, Isaza CE, Pérez-Morales J, Rodríguez-Padilla C, Castro JM, Cabrera-Ríos M.

Cancer Med. 2013 Apr;2(2):253-65. doi: 10.1002/cam4.69. Epub 2013 Feb 27.

PMID:
23634293
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Translational biomedical informatics in the cloud: present and future.

Chen J, Qian F, Yan W, Shen B.

Biomed Res Int. 2013;2013:658925. doi: 10.1155/2013/658925. Epub 2013 Mar 17. Review.

PMID:
23586054
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transcriptome analysis of spermatogenically regressed, recrudescent and active phase testis of seasonally breeding wall lizards Hemidactylus flaviviridis.

Gautam M, Mathur A, Khan MA, Majumdar SS, Rai U.

PLoS One. 2013;8(3):e58276. doi: 10.1371/journal.pone.0058276. Epub 2013 Mar 11.

PMID:
23536792
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Interferome v2.0: an updated database of annotated interferon-regulated genes.

Rusinova I, Forster S, Yu S, Kannan A, Masse M, Cumming H, Chapman R, Hertzog PJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1040-6. doi: 10.1093/nar/gks1215. Epub 2012 Nov 29.

PMID:
23203888
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Precise probes of type II interferon activity define the origin of interferon signatures in target tissues in rheumatic diseases.

Hall JC, Casciola-Rosen L, Berger AE, Kapsogeorgou EK, Cheadle C, Tzioufas AG, Baer AN, Rosen A.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17609-14. doi: 10.1073/pnas.1209724109. Epub 2012 Oct 8.

PMID:
23045702
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-wide expressions in autologous eutopic and ectopic endometrium of fertile women with endometriosis.

Khan MA, Sengupta J, Mittal S, Ghosh D.

Reprod Biol Endocrinol. 2012 Sep 24;10:84. doi: 10.1186/1477-7827-10-84.

PMID:
23006437
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Bayesian assignment of gene ontology terms to gene expression experiments.

Sykacek P.

Bioinformatics. 2012 Sep 15;28(18):i603-i610. doi: 10.1093/bioinformatics/bts405.

PMID:
22962488
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Identification of novel autoantigens by a triangulation approach.

Cottrell TR, Hall JC, Rosen A, Casciola-Rosen L.

J Immunol Methods. 2012 Nov 30;385(1-2):35-44. doi: 10.1016/j.jim.2012.07.024. Epub 2012 Aug 11.

PMID:
22910000
[PubMed - indexed for MEDLINE]
Free PMC Article
17.
18.

Statistical methods for identifying differentially expressed genes in RNA-Seq experiments.

Fang Z, Martin J, Wang Z.

Cell Biosci. 2012 Jul 31;2(1):26. doi: 10.1186/2045-3701-2-26.

PMID:
22849430
[PubMed]
Free PMC Article
19.

Effects of pooling samples on the performance of classification algorithms: a comparative study.

Kusonmano K, Netzer M, Baumgartner C, Dehmer M, Liedl KR, Graber A.

ScientificWorldJournal. 2012;2012:278352. doi: 10.1100/2012/278352. Epub 2012 Apr 30.

PMID:
22654582
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Erythroid-specific transcriptional changes in PBMCs from pulmonary hypertension patients.

Cheadle C, Berger AE, Mathai SC, Grigoryev DN, Watkins TN, Sugawara Y, Barkataki S, Fan J, Boorgula M, Hummers L, Zaiman AL, Girgis R, McDevitt MA, Johns RA, Wigley F, Barnes KC, Hassoun PM.

PLoS One. 2012;7(4):e34951. doi: 10.1371/journal.pone.0034951. Epub 2012 Apr 24.

PMID:
22545094
[PubMed - indexed for MEDLINE]
Free PMC Article

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