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Being cosmopolitan: evolutionary history and phylogeography of a specialized raptor, the Osprey Pandion haliaetus.

Monti F, Duriez O, Arnal V, Dominici JM, Sforzi A, Fusani L, Grémillet D, Montgelard C.

BMC Evol Biol. 2015 Nov 17;15:255. doi: 10.1186/s12862-015-0535-6.


Event inference in multidomain families with phylogenetic reconciliation.

Stolzer M, Siewert K, Lai H, Xu M, Durand D.

BMC Bioinformatics. 2015 Oct 2;16 Suppl 14:S8. doi: 10.1186/1471-2105-16-S14-S8. Epub 2015 Oct 2.


Hidden biodiversity in an ancient lake: phylogenetic congruence between Lake Tanganyika tropheine cichlids and their monogenean flatworm parasites.

Vanhove MP, Pariselle A, Van Steenberge M, Raeymaekers JA, Hablützel PI, Gillardin C, Hellemans B, Breman FC, Koblmüller S, Sturmbauer C, Snoeks J, Volckaert FA, Huyse T.

Sci Rep. 2015 Sep 3;5:13669. doi: 10.1038/srep13669.


Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage.

Marcet-Houben M, Gabaldón T.

PLoS Biol. 2015 Aug 7;13(8):e1002220. doi: 10.1371/journal.pbio.1002220. eCollection 2015 Aug.


POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.

Hongo JA, de Castro GM, Cintra LC, Zerlotini A, Lobo FP.

BMC Genomics. 2015 Aug 1;16:567. doi: 10.1186/s12864-015-1765-0.


Impermanence of bacterial clones.

Bobay LM, Traverse CC, Ochman H.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):8893-900. doi: 10.1073/pnas.1501724112.


Origin and Population Dynamics of a Novel HIV-1 Subtype G Clade Circulating in Cape Verde and Portugal.

de Pina-Araujo II, Delatorre E, Guimarães ML, Morgado MG, Bello G.

PLoS One. 2015 May 20;10(5):e0127384. doi: 10.1371/journal.pone.0127384. eCollection 2015.


Molecular Epidemiology and Phylogenetic Analysis of Human Adenovirus Caused an Outbreak in Taiwan during 2011.

Lin YC, Lu PL, Lin KH, Chu PY, Wang CF, Lin JH, Liu HF.

PLoS One. 2015 May 18;10(5):e0127377. doi: 10.1371/journal.pone.0127377. eCollection 2015.


Impact of spatial dispersion, evolution, and selection on Ebola Zaire Virus epidemic waves.

Azarian T, Lo Presti A, Giovanetti M, Cella E, Rife B, Lai A, Zehender G, Ciccozzi M, Salemi M.

Sci Rep. 2015 May 14;5:10170. doi: 10.1038/srep10170.


Functionally Structured Genomes in Lactobacillus kunkeei Colonizing the Honey Crop and Food Products of Honeybees and Stingless Bees.

Tamarit D, Ellegaard KM, Wikander J, Olofsson T, Vásquez A, Andersson SG.

Genome Biol Evol. 2015 May 6;7(6):1455-73. doi: 10.1093/gbe/evv079.


Population Genetic Structure Within and among Seasonal Site Types in the Little Brown Bat (Myotis lucifugus) and the Northern Long-Eared Bat (M. septentrionalis).

Johnson LN, McLeod BA, Burns LE, Arseneault K, Frasier TR, Broders HG.

PLoS One. 2015 May 5;10(5):e0126309. doi: 10.1371/journal.pone.0126309. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0133457.


The alveolate translation initiation factor 4E family reveals a custom toolkit for translational control in core dinoflagellates.

Jones GD, Williams EP, Place AR, Jagus R, Bachvaroff TR.

BMC Evol Biol. 2015 Feb 10;15:14. doi: 10.1186/s12862-015-0301-9.


Time-calibrated phylogenomics of the classical swine fever viruses: genome-wide bayesian coalescent approach.

Kwon T, Yoon SH, Kim KW, Caetano-Anolles K, Cho S, Kim H.

PLoS One. 2015 Mar 27;10(3):e0121578. doi: 10.1371/journal.pone.0121578. eCollection 2015.


Comparative genomic and phylogenetic analyses of Gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP operon to the last common ancestor of the sister orders Enterobacteriales and Pasteurellales.

Almagro G, Viale AM, Montero M, Rahimpour M, Muñoz FJ, Baroja-Fernández E, Bahaji A, Zúñiga M, González-Candelas F, Pozueta-Romero J.

PLoS One. 2015 Jan 21;10(1):e0115516. doi: 10.1371/journal.pone.0115516. eCollection 2015.


Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection.

Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT, Weppelmann TA, Katz LS, Tarr CL, Colwell RR, Morris JG Jr, Salemi M.

MBio. 2014 Dec 23;5(6). pii: e01824-14. doi: 10.1128/mBio.01824-14.

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