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Items: 18


Elements of the cellular metabolic structure.

De la Fuente IM.

Front Mol Biosci. 2015 Apr 28;2:16. doi: 10.3389/fmolb.2015.00016. eCollection 2015.


Quantifying periodicity in omics data.

Amariei C, Tomita M, Murray DB.

Front Cell Dev Biol. 2014 Aug 19;2:40. doi: 10.3389/fcell.2014.00040. eCollection 2014.


On the dynamics of the adenylate energy system: homeorhesis vs homeostasis.

De la Fuente IM, Cortés JM, Valero E, Desroches M, Rodrigues S, Malaina I, Martínez L.

PLoS One. 2014 Oct 10;9(10):e108676. doi: 10.1371/journal.pone.0108676. eCollection 2014.


Cell cycle dynamics in a response/signalling feedback system with a gap.

Gong X, Buckalew R, Young T, Boczko E.

J Biol Dyn. 2014;8:79-98. doi: 10.1080/17513758.2014.904526.


Discovery of cell-type specific regulatory elements in the human genome using differential chromatin modification analysis.

Chen C, Zhang S, Zhang XS.

Nucleic Acids Res. 2013 Nov;41(20):9230-42. doi: 10.1093/nar/gkt712. Epub 2013 Aug 14.


The metabolic core and catalytic switches are fundamental elements in the self-regulation of the systemic metabolic structure of cells.

Fuente IM, Cortes JM, Perez-Pinilla MB, Ruiz-Rodriguez V, Veguillas J.

PLoS One. 2011;6(11):e27224. doi: 10.1371/journal.pone.0027224. Epub 2011 Nov 18.


Clustering in cell cycle dynamics with general response/signaling feedback.

Young TR, Fernandez B, Buckalew R, Moses G, Boczko EM.

J Theor Biol. 2012 Jan 7;292:103-15. doi: 10.1016/j.jtbi.2011.10.002. Epub 2011 Oct 8.


Regulation of the yeast metabolic cycle by transcription factors with periodic activities.

Rao AR, Pellegrini M.

BMC Syst Biol. 2011 Oct 12;5:160. doi: 10.1186/1752-0509-5-160.


Wavelet measurement suggests cause of period instability in mammalian circadian neurons.

Meeker K, Harang R, Webb AB, Welsh DK, Doyle FJ 3rd, Bonnet G, Herzog ED, Petzold LR.

J Biol Rhythms. 2011 Aug;26(4):353-62. doi: 10.1177/0748730411409863.


Quantitative analysis of cellular metabolic dissipative, self-organized structures.

de la Fuente IM.

Int J Mol Sci. 2010 Sep 27;11(9):3540-99. doi: 10.3390/ijms11093540. Review.


Impact of nuclear organization and dynamics on epigenetic regulation in the central nervous system: implications for neurological disease states.

Qureshi IA, Mehler MF.

Ann N Y Acad Sci. 2010 Sep;1204 Suppl:E20-37. doi: 10.1111/j.1749-6632.2010.05718.x. Review.


ODE, RDE and SDE models of cell cycle dynamics and clustering in yeast.

Boczko EM, Gedeon T, Stowers CC, Young TR.

J Biol Dyn. 2010 Jul;4(4):328-45.


Global self-regulation of the cellular metabolic structure.

De la Fuente IM, Vadillo F, Pérez-Samartín AL, Pérez-Pinilla MB, Bidaurrazaga J, Vera-López A.

PLoS One. 2010 Mar 2;5(3):e9484. doi: 10.1371/journal.pone.0009484.


The number of catalytic elements is crucial for the emergence of metabolic cores.

De la Fuente IM, Vadillo F, Pérez-Pinilla MB, Vera-López A, Veguillas J.

PLoS One. 2009 Oct 19;4(10):e7510. doi: 10.1371/journal.pone.0007510.


Global self-organization of the cellular metabolic structure.

De La Fuente IM, Martínez L, Pérez-Samartín AL, Ormaetxea L, Amezaga C, Vera-López A.

PLoS One. 2008 Aug 29;3(8):e3100. doi: 10.1371/journal.pone.0003100.


Noise-limited frequency signal transmission in gene circuits.

Tan C, Reza F, You L.

Biophys J. 2007 Dec 1;93(11):3753-61. Epub 2007 Aug 17.


A genomewide oscillation in transcription gates DNA replication and cell cycle.

Klevecz RR, Bolen J, Forrest G, Murray DB.

Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1200-5. Epub 2004 Jan 20.

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