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Items: 1 to 20 of 122


Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation.

Junier I, Rivoire O.

PLoS One. 2016 May 19;11(5):e0155740. doi: 10.1371/journal.pone.0155740. eCollection 2016.


Origin and Evolution of Rickettsial Plasmids.

El Karkouri K, Pontarotti P, Raoult D, Fournier PE.

PLoS One. 2016 Feb 11;11(2):e0147492. doi: 10.1371/journal.pone.0147492. eCollection 2016.


In Silico Gene-Level Evolution Explains Microbial Population Diversity through Differential Gene Mobility.

van Dijk B, Hogeweg P.

Genome Biol Evol. 2015 Dec 28;8(1):176-88. doi: 10.1093/gbe/evv255.


Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi.

Marcet-Houben M, Gabaldón T.

Fungal Genet Biol. 2016 Jan;86:71-80. doi: 10.1016/j.fgb.2015.12.006. Epub 2015 Dec 10.


Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated.

Groussin M, Boussau B, Szöllõsi G, Eme L, Gouy M, Brochier-Armanet C, Daubin V.

Mol Biol Evol. 2016 Feb;33(2):305-10. doi: 10.1093/molbev/msv249. Epub 2015 Nov 4.


Complementarity among plant growth promoting traits in rhizospheric bacterial communities promotes plant growth.

Singh M, Awasthi A, Soni SK, Singh R, Verma RK, Kalra A.

Sci Rep. 2015 Oct 27;5:15500. doi: 10.1038/srep15500.


Evolutionary history influences the salinity preference of bacterial taxa in wetland soils.

Morrissey EM, Franklin RB.

Front Microbiol. 2015 Oct 2;6:1013. doi: 10.3389/fmicb.2015.01013. eCollection 2015.


Event inference in multidomain families with phylogenetic reconciliation.

Stolzer M, Siewert K, Lai H, Xu M, Durand D.

BMC Bioinformatics. 2015;16 Suppl 14:S8. doi: 10.1186/1471-2105-16-S14-S8. Epub 2015 Oct 2.


Gene Loss Dominates As a Source of Genetic Variation within Clonal Pathogenic Bacterial Species.

Bolotin E, Hershberg R.

Genome Biol Evol. 2015 Jul 10;7(8):2173-87. doi: 10.1093/gbe/evv135.


Microbial response to simulated global change is phylogenetically conserved and linked with functional potential.

Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB.

ISME J. 2016 Jan;10(1):109-18. doi: 10.1038/ismej.2015.96. Epub 2015 Jun 5.


The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life.

Koonin EV.

J Mol Evol. 2015 Jun;80(5-6):244-50. doi: 10.1007/s00239-015-9679-7. Epub 2015 Apr 18. Review.


Estimation of prokaryotic supergenome size and composition from gene frequency distributions.

Lobkovsky AE, Wolf YI, Koonin EV.

BMC Genomics. 2014;15 Suppl 6:S14. doi: 10.1186/1471-2164-15-S6-S14. Epub 2014 Oct 17.


A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation.

Trachana K, Forslund K, Larsson T, Powell S, Doerks T, von Mering C, Bork P.

PLoS One. 2014 Nov 4;9(11):e111122. doi: 10.1371/journal.pone.0111122. eCollection 2014.


Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes.

Puigbò P, Lobkovsky AE, Kristensen DM, Wolf YI, Koonin EV.

BMC Biol. 2014 Aug 21;12:66. doi: 10.1186/s12915-014-0066-4.


Comparative genomics of the bacterial genus Streptococcus illuminates evolutionary implications of species groups.

Gao XY, Zhi XY, Li HW, Klenk HP, Li WJ.

PLoS One. 2014 Jun 30;9(6):e101229. doi: 10.1371/journal.pone.0101229. eCollection 2014.


Ecological and temporal constraints in the evolution of bacterial genomes.

Boto L, Martínez JL.

Genes (Basel). 2011 Oct 31;2(4):804-28. doi: 10.3390/genes2040804.


Models of gene gain and gene loss for probabilistic reconstruction of gene content in the last universal common ancestor of life.

Kannan L, Li H, Rubinstein B, Mushegian A.

Biol Direct. 2013 Dec 19;8:32. doi: 10.1186/1745-6150-8-32.


Evolution of divergent life history strategies in marine alphaproteobacteria.

Luo H, Csuros M, Hughes AL, Moran MA.

MBio. 2013 Jul 9;4(4). pii: e00373-13. doi: 10.1128/mBio.00373-13.

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