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Items: 12


RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign.

Bindewald E, Hayes R, Yingling YG, Kasprzak W, Shapiro BA.

Nucleic Acids Res. 2008 Jan;36(Database issue):D392-7. Epub 2007 Oct 18.


Accuracy of structure-based sequence alignment of automatic methods.

Kim C, Lee B.

BMC Bioinformatics. 2007 Sep 20;8:355.


Finding biologically relevant protein domain interactions: conserved binding mode analysis.

Shoemaker BA, Panchenko AR, Bryant SH.

Protein Sci. 2006 Feb;15(2):352-61. Epub 2005 Dec 29.


Mode of action and biochemical characterization of REP8839, a novel inhibitor of methionyl-tRNA synthetase.

Ochsner UA, Young CL, Stone KC, Dean FB, Janjic N, Critchley IA.

Antimicrob Agents Chemother. 2005 Oct;49(10):4253-62.


ARAMEMNON, a novel database for Arabidopsis integral membrane proteins.

Schwacke R, Schneider A, van der Graaff E, Fischer K, Catoni E, Desimone M, Frommer WB, Fl├╝gge UI, Kunze R.

Plant Physiol. 2003 Jan;131(1):16-26.


The Structure Superposition Database.

Chiang RA, Meng EC, Huang CC, Ferrin TE, Babbitt PC.

Nucleic Acids Res. 2003 Jan 1;31(1):505-10.


The PSSH database of alignments between protein sequences and tertiary structures.

Schafferhans A, Meyer JE, O'Donoghue SI.

Nucleic Acids Res. 2003 Jan 1;31(1):494-8.


MMDB: Entrez's 3D-structure database.

Chen J, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler-Bauer A, Marchler GH, Mazumder R, Nikolskaya AN, Rao BS, Panchenko AR, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH.

Nucleic Acids Res. 2003 Jan 1;31(1):474-7.


BIND: the Biomolecular Interaction Network Database.

Bader GD, Betel D, Hogue CW.

Nucleic Acids Res. 2003 Jan 1;31(1):248-50.



Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.

Nucleic Acids Res. 2003 Jan 1;31(1):23-7.


SeqHound: biological sequence and structure database as a platform for bioinformatics research.

Michalickova K, Bader GD, Dumontier M, Lieu H, Betel D, Isserlin R, Hogue CW.

BMC Bioinformatics. 2002 Oct 25;3:32. Epub 2002 Oct 25.



Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL.

Nucleic Acids Res. 2002 Jan 1;30(1):17-20.

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