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Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease.

Gerstberger S, Hafner M, Ascano M, Tuschl T.

Adv Exp Med Biol. 2014;825:1-55. doi: 10.1007/978-1-4939-1221-6_1. Review.


The cysteine desulfhydrase CdsH is conditionally required for sulfur mobilization to the thiamine thiazole in Salmonella enterica.

Palmer LD, Leung MH, Downs DM.

J Bacteriol. 2014 Nov;196(22):3964-70. doi: 10.1128/JB.02159-14. Epub 2014 Sep 2.


Crystal structure of a 4-thiouridine synthetase-RNA complex reveals specificity of tRNA U8 modification.

Neumann P, Lakomek K, Naumann PT, Erwin WM, Lauhon CT, Ficner R.

Nucleic Acids Res. 2014 Jun;42(10):6673-85. doi: 10.1093/nar/gku249. Epub 2014 Apr 5.


Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate.

Shao Z, Yan W, Peng J, Zuo X, Zou Y, Li F, Gong D, Ma R, Wu J, Shi Y, Zhang Z, Teng M, Li X, Gong Q.

Nucleic Acids Res. 2014 Jan;42(1):509-25. doi: 10.1093/nar/gkt869. Epub 2013 Sep 29.


Insights into the mechanism of cell death induced by saporin delivered into cancer cells by an antibody fusion protein targeting the transferrin receptor 1.

Daniels-Wells TR, Helguera G, Rodríguez JA, Leoh LS, Erb MA, Diamante G, Casero D, Pellegrini M, Martínez-Maza O, Penichet ML.

Toxicol In Vitro. 2013 Feb;27(1):220-31. doi: 10.1016/j.tiv.2012.10.006. Epub 2012 Oct 17.


Crystal structure of RlmM, the 2'O-ribose methyltransferase for C2498 of Escherichia coli 23S rRNA.

Punekar AS, Shepherd TR, Liljeruhm J, Forster AC, Selmer M.

Nucleic Acids Res. 2012 Nov 1;40(20):10507-20. doi: 10.1093/nar/gks727. Epub 2012 Aug 25.


Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.

Fislage M, Roovers M, Tuszynska I, Bujnicki JM, Droogmans L, Versées W.

Nucleic Acids Res. 2012 Jun;40(11):5149-61. doi: 10.1093/nar/gks163. Epub 2012 Feb 22.


Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA.

Wang KT, Desmolaize B, Nan J, Zhang XW, Li LF, Douthwaite S, Su XD.

Nucleic Acids Res. 2012 Jun;40(11):5138-48. doi: 10.1093/nar/gks160. Epub 2012 Feb 22.


The open reading frame TTC1157 of Thermus thermophilus HB27 encodes the methyltransferase forming N²-methylguanosine at position 6 in tRNA.

Roovers M, Oudjama Y, Fislage M, Bujnicki JM, Versées W, Droogmans L.

RNA. 2012 Apr;18(4):815-24. doi: 10.1261/rna.030411.111. Epub 2012 Feb 15.


Base methylations in the double-stranded RNA by a fused methyltransferase bearing unwinding activity.

Kimura S, Ikeuchi Y, Kitahara K, Sakaguchi Y, Suzuki T, Suzuki T.

Nucleic Acids Res. 2012 May;40(9):4071-85. doi: 10.1093/nar/gkr1287. Epub 2011 Dec 30.


Crystallization and preliminary X-ray crystallographic analysis of putative tRNA-modification enzymes from Pyrococcus furiosus and Thermus thermophilus.

Fislage M, Roovers M, Münnich S, Droogmans L, Versées W.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Nov 1;67(Pt 11):1432-5. doi: 10.1107/S1744309111036347. Epub 2011 Oct 27.


Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems.

Iyer LM, Zhang D, Rogozin IB, Aravind L.

Nucleic Acids Res. 2011 Dec;39(22):9473-97. doi: 10.1093/nar/gkr691. Epub 2011 Sep 3.


The rhodanese domain of ThiI is both necessary and sufficient for synthesis of the thiazole moiety of thiamine in Salmonella enterica.

Martinez-Gomez NC, Palmer LD, Vivas E, Roach PL, Downs DM.

J Bacteriol. 2011 Sep;193(18):4582-7. doi: 10.1128/JB.05325-11. Epub 2011 Jul 1.


Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14.

Menezes S, Gaston KW, Krivos KL, Apolinario EE, Reich NO, Sowers KR, Limbach PA, Perona JJ.

Nucleic Acids Res. 2011 Sep 1;39(17):7641-55. doi: 10.1093/nar/gkr475. Epub 2011 Jun 21.


RBPDB: a database of RNA-binding specificities.

Cook KB, Kazan H, Zuberi K, Morris Q, Hughes TR.

Nucleic Acids Res. 2011 Jan;39(Database issue):D301-8. doi: 10.1093/nar/gkq1069. Epub 2010 Oct 29.


Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand.

Tanaka Y, Yamagata S, Kitago Y, Yamada Y, Chimnaronk S, Yao M, Tanaka I.

RNA. 2009 Aug;15(8):1498-506. doi: 10.1261/rna.1614709. Epub 2009 Jun 9.


A cytidine deaminase edits C to U in transfer RNAs in Archaea.

Randau L, Stanley BJ, Kohlway A, Mechta S, Xiong Y, Söll D.

Science. 2009 May 1;324(5927):657-9. doi: 10.1126/science.1170123.


Natural history of the E1-like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation.

Burroughs AM, Iyer LM, Aravind L.

Proteins. 2009 Jun;75(4):895-910. doi: 10.1002/prot.22298.


Expression, purification, crystallization and preliminary X-ray studies of the TAN1 orthologue from Methanothermobacter thermautotrophicus.

Silva AP, Byrne RT, Chechik M, Smits C, Waterman DG, Antson AA.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Nov 1;64(Pt 11):1083-6. doi: 10.1107/S1744309108034039. Epub 2008 Oct 31.

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