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Items: 1 to 20 of 54


Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond.

Hiraoka S, Yang CC, Iwasaki W.

Microbes Environ. 2016 Jul 5. [Epub ahead of print]


Functional metagenomic screen reveals new and diverse microbial rhodopsins.

Pushkarev A, Béjà O.

ISME J. 2016 Sep;10(9):2331-5. doi: 10.1038/ismej.2016.7. Epub 2016 Feb 19.


Marine Group II Archaea, potentially important players in the global ocean carbon cycle.

Zhang CL, Xie W, Martin-Cuadrado AB, Rodriguez-Valera F.

Front Microbiol. 2015 Oct 13;6:1108. doi: 10.3389/fmicb.2015.01108. eCollection 2015. Review.


Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage.

Fillol M, Auguet JC, Casamayor EO, Borrego CM.

ISME J. 2016 Mar;10(3):665-77. doi: 10.1038/ismej.2015.143. Epub 2015 Aug 18.


Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter.

Orsi WD, Smith JM, Wilcox HM, Swalwell JE, Carini P, Worden AZ, Santoro AE.

ISME J. 2015 Aug;9(8):1747-63. doi: 10.1038/ismej.2014.260. Epub 2015 Jan 23.


A new class of marine Euryarchaeota group II from the Mediterranean deep chlorophyll maximum.

Martin-Cuadrado AB, Garcia-Heredia I, Moltó AG, López-Úbeda R, Kimes N, López-García P, Moreira D, Rodriguez-Valera F.

ISME J. 2015 Jul;9(7):1619-34. doi: 10.1038/ismej.2014.249. Epub 2014 Dec 23.


454-pyrosequencing: a molecular battiscope for freshwater viral ecology.

Rooks DJ, Smith DL, McDonald JE, Woodward MJ, McCarthy AJ, Allison HE.

Genes (Basel). 2010 Jul 21;1(2):210-26. doi: 10.3390/genes1020210.


Metagenomics in animal gastrointestinal ecosystem: a microbiological and biotechnological perspective.

Singh B, Bhat TK, Kurade NP, Sharma OP.

Indian J Microbiol. 2008 Jun;48(2):216-27. doi: 10.1007/s12088-008-0027-0. Epub 2008 Jun 17.


Metagenomics: Future of microbial gene mining.

Vakhlu J, Sudan AK, Johri BN.

Indian J Microbiol. 2008 Jun;48(2):202-15. doi: 10.1007/s12088-008-0033-2. Epub 2008 Jul 27.


From bacterial genomics to metagenomics: concept, tools and recent advances.

Sharma P, Kumari H, Kumar M, Verma M, Kumari K, Malhotra S, Khurana J, Lal R.

Indian J Microbiol. 2008 Jun;48(2):173-94. doi: 10.1007/s12088-008-0031-4. Epub 2008 Jul 27.


Separating metagenomic short reads into genomes via clustering.

Tanaseichuk O, Borneman J, Jiang T.

Algorithms Mol Biol. 2012 Sep 26;7(1):27. doi: 10.1186/1748-7188-7-27.


Artificial chromosomes to explore and to exploit biosynthetic capabilities of actinomycetes.

Alduina R, Gallo G.

J Biomed Biotechnol. 2012;2012:462049. doi: 10.1155/2012/462049. Epub 2012 Aug 7. Review.


Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis.

Danhorn T, Young CR, DeLong EF.

ISME J. 2012 Nov;6(11):2056-66. doi: 10.1038/ismej.2012.35. Epub 2012 Apr 26. Erratum in: ISME J. 2012 Nov;6(11):2152.


Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

Brochier-Armanet C, Deschamps P, López-García P, Zivanovic Y, Rodríguez-Valera F, Moreira D.

ISME J. 2011 Aug;5(8):1291-302. doi: 10.1038/ismej.2011.16. Epub 2011 Feb 24.


Size Does Matter: Application-driven Approaches for Soil Metagenomics.

Kakirde KS, Parsley LC, Liles MR.

Soil Biol Biochem. 2010 Nov 1;42(11):1911-1923.


Marine genomics: at the interface of marine microbial ecology and biodiscovery.

Heidelberg KB, Gilbert JA, Joint I.

Microb Biotechnol. 2010 Sep;3(5):531-43. doi: 10.1111/j.1751-7915.2010.00193.x. Review.


Enigmatic, ultrasmall, uncultivated Archaea.

Baker BJ, Comolli LR, Dick GJ, Hauser LJ, Hyatt D, Dill BD, Land ML, Verberkmoes NC, Hettich RL, Banfield JF.

Proc Natl Acad Sci U S A. 2010 May 11;107(19):8806-11. doi: 10.1073/pnas.0914470107. Epub 2010 Apr 26.


The systemic imprint of growth and its uses in ecological (meta)genomics.

Vieira-Silva S, Rocha EP.

PLoS Genet. 2010 Jan 15;6(1):e1000808. doi: 10.1371/journal.pgen.1000808.


Large insert environmental genomic library production.

Taupp M, Lee S, Hawley A, Yang J, Hallam SJ.

J Vis Exp. 2009 Sep 23;(31). pii: 1387. doi: 10.3791/1387.

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