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Items: 18

1.

Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA.

Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X.

Nucleic Acids Res. 2014 Jul;42(12):7947-59. doi: 10.1093/nar/gku497. Epub 2014 Jun 3.

2.

Type II restriction endonucleases--a historical perspective and more.

Pingoud A, Wilson GG, Wende W.

Nucleic Acids Res. 2014 Jul;42(12):7489-527. doi: 10.1093/nar/gku447. Epub 2014 May 30. Review.

3.

Rational engineering of sequence specificity in R.MwoI restriction endonuclease.

Skowronek K, Boniecki MJ, Kluge B, Bujnicki JM.

Nucleic Acids Res. 2012 Sep 1;40(17):8579-92. Epub 2012 Jun 25.

4.

Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily.

Steczkiewicz K, Muszewska A, Knizewski L, Rychlewski L, Ginalski K.

Nucleic Acids Res. 2012 Aug;40(15):7016-45. doi: 10.1093/nar/gks382. Epub 2012 May 25.

5.

DNA intercalation without flipping in the specific ThaI-DNA complex.

Firczuk M, Wojciechowski M, Czapinska H, Bochtler M.

Nucleic Acids Res. 2011 Jan;39(2):744-54. doi: 10.1093/nar/gkq834. Epub 2010 Sep 21.

6.

Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII.

Golovenko D, Manakova E, Tamulaitiene G, Grazulis S, Siksnys V.

Nucleic Acids Res. 2009 Oct;37(19):6613-24. doi: 10.1093/nar/gkp699. Epub 2009 Sep 3.

7.

Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses.

Orlowski J, Bujnicki JM.

Nucleic Acids Res. 2008 Jun;36(11):3552-69. doi: 10.1093/nar/gkn175. Epub 2008 May 2.

8.

Topology of Type II REases revisited; structural classes and the common conserved core.

Niv MY, Ripoll DR, Vila JA, Liwo A, Vanamee ES, Aggarwal AK, Weinstein H, Scheraga HA.

Nucleic Acids Res. 2007;35(7):2227-37. Epub 2007 Mar 16.

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11.

A homology model of restriction endonuclease SfiI in complex with DNA.

Chmiel AA, Bujnicki JM, Skowronek KJ.

BMC Struct Biol. 2005 Jan 24;5:2.

12.

Diversity of type II restriction endonucleases that require two DNA recognition sites.

Mucke M, Kruger DH, Reuter M.

Nucleic Acids Res. 2003 Nov 1;31(21):6079-84.

13.

EcoRII: a restriction enzyme evolving recombination functions?

Mücke M, Grelle G, Behlke J, Kraft R, Krüger DH, Reuter M.

EMBO J. 2002 Oct 1;21(19):5262-8.

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Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease.

Bitinaite J, Schildkraut I.

Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1164-9. Epub 2002 Jan 29.

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Structure and function of type II restriction endonucleases.

Pingoud A, Jeltsch A.

Nucleic Acids Res. 2001 Sep 15;29(18):3705-27. Review.

18.

Recognition of native DNA methylation by the PvuII restriction endonuclease.

Rice MR, Blumenthal RM.

Nucleic Acids Res. 2000 Aug 15;28(16):3143-50.

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