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Results: 1 to 20 of 99

Cited In for PubMed (Select 10694875)

1.

Chromatin accessibility: a window into the genome.

Tsompana M, Buck MJ.

Epigenetics Chromatin. 2014 Nov 20;7(1):33. doi: 10.1186/1756-8935-7-33. eCollection 2014. Review.

2.

Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae.

Kennedy-Darling J, Guillen-Ahlers H, Shortreed MR, Scalf M, Frey BL, Kendziorski C, Olivier M, Gasch AP, Smith LM.

J Proteome Res. 2014 Aug 1;13(8):3810-25. doi: 10.1021/pr5004938. Epub 2014 Jul 17.

3.

Genome-wide (over)view on the actions of vitamin D.

Carlberg C.

Front Physiol. 2014 Apr 29;5:167. doi: 10.3389/fphys.2014.00167. eCollection 2014. Review.

4.

The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes.

Gushchanskaya ES, Artemov AV, Ulyanov SV, Logacheva MD, Penin AA, Kotova ES, Akopov SB, Nikolaev LG, Iarovaia OV, Sverdlov ED, Gavrilov AA, Razin SV.

Epigenetics. 2014 Jul;9(7):951-63. doi: 10.4161/epi.28794. Epub 2014 Apr 15.

5.

Leveraging biological replicates to improve analysis in ChIP-seq experiments.

Yang Y, Fear J, Hu J, Haecker I, Zhou L, Renne R, Bloom D, McIntyre LM.

Comput Struct Biotechnol J. 2014 Jan 31;9:e201401002. doi: 10.5936/csbj.201401002. eCollection 2014.

6.

Fixated on fixation: using ChIP to interrogate the dynamics of chromatin interactions.

Keren L, Segal E.

Genome Biol. 2013 Nov 21;14(11):138. doi: 10.1186/gb4139.

7.

Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots.

Kumari S, Ware D.

PLoS One. 2013 Oct 29;8(10):e79011. doi: 10.1371/journal.pone.0079011. eCollection 2013.

8.

Genome wide mapping reveals PDE4B as an IL-2 induced STAT5 target gene in activated human PBMCs and lymphoid cancer cells.

Nagy ZS, Ross JA, Rodriguez G, Balint BL, Szeles L, Nagy L, Kirken RA.

PLoS One. 2013;8(2):e57326. doi: 10.1371/journal.pone.0057326. Epub 2013 Feb 25. Erratum in: PLoS One. 2013;8(2). doi:10.1371/annotation/cb55d096-61f8-46de-b58f-81a872be6dd3.

9.

Nanobody(R)-based chromatin immunoprecipitation/micro-array analysis for genome-wide identification of transcription factor DNA binding sites.

Nguyen-Duc T, Peeters E, Muyldermans S, Charlier D, Hassanzadeh-Ghassabeh G.

Nucleic Acids Res. 2013 Mar 1;41(5):e59. doi: 10.1093/nar/gks1342. Epub 2012 Dec 28.

10.

PUB-NChIP--"in vivo biotinylation" approach to study chromatin in proximity to a protein of interest.

Shoaib M, Kulyyassov A, Robin C, Winczura K, Tarlykov P, Despas E, Kannouche P, Ramanculov E, Lipinski M, Ogryzko V.

Genome Res. 2013 Feb;23(2):331-40. doi: 10.1101/gr.134874.111. Epub 2012 Oct 4.

11.

Methods for cancer epigenome analysis.

Nagarajan RP, Fouse SD, Bell RJ, Costello JF.

Adv Exp Med Biol. 2013;754:313-38. doi: 10.1007/978-1-4419-9967-2_15. Review.

12.

Transcriptional regulation of hTREX84 in human cancer cells.

Guo S, Liu M, Godwin AK.

PLoS One. 2012;7(8):e43610. doi: 10.1371/journal.pone.0043610. Epub 2012 Aug 27.

13.

Chromatin immunoprecipitation: advancing analysis of nuclear hormone signaling.

Vinckevicius A, Chakravarti D.

J Mol Endocrinol. 2012 Sep 5;49(2):R113-23. doi: 10.1530/JME-12-0016. Print 2012 Oct. Review.

14.

Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite.

Wang X, Zhang X.

BMC Syst Biol. 2011;5 Suppl 2:S3. doi: 10.1186/1752-0509-5-S2-S3. Epub 2011 Dec 14.

15.

A regulatory potential of the Xist gene promoter in vole M. rossiaemeridionalis.

Orishchenko KE, Pavlova SV, Elisaphenko EA, Sherstyuk VV, Prinz AV, Shevchenko AI, Dementyeva EV, Zakian SM.

PLoS One. 2012;7(5):e33994. doi: 10.1371/journal.pone.0033994. Epub 2012 May 11.

16.

Interrogating genomic and epigenomic data to understand prostate cancer.

Kim J, Yu J.

Biochim Biophys Acta. 2012 Apr;1825(2):186-96. doi: 10.1016/j.bbcan.2011.12.003. Epub 2012 Jan 3. Review.

17.

Chromatin immunoprecipitation assay as a tool for analyzing transcription factor activity.

Gade P, Kalvakolanu DV.

Methods Mol Biol. 2012;809:85-104. doi: 10.1007/978-1-61779-376-9_6.

18.

Identification of cis-regulatory sequence variations in individual genome sequences.

Worsley-Hunt R, Bernard V, Wasserman WW.

Genome Med. 2011 Oct 10;3(10):65. doi: 10.1186/gm281.

19.

Detection of histone modifications in plant leaves.

Jaskiewicz M, Peterhansel C, Conrath U.

J Vis Exp. 2011 Sep 23;(55). pii: 3096. doi: 10.3791/3096.

20.

A linear model for transcription factor binding affinity prediction in protein binding microarrays.

Annala M, Laurila K, Lähdesmäki H, Nykter M.

PLoS One. 2011;6(5):e20059. doi: 10.1371/journal.pone.0020059. Epub 2011 May 26.

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