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Results: 1 to 20 of 163

1.

Molecular basis of RNA polymerase promoter specificity switch revealed through studies of Thermus bacteriophage transcription regulator.

Severinov K, Minakhin L, Sekine SI, Lopatina A, Yokoyama S.

Bacteriophage. 2014 May 29;4:e29399. eCollection 2014.

PMID:
25105059
[PubMed]
Free PMC Article
2.

Transcription inhibition by the depsipeptide antibiotic salinamide A.

Degen D, Feng Y, Zhang Y, Ebright KY, Ebright YW, Gigliotti M, Vahedian-Movahed H, Mandal S, Talaue M, Connell N, Arnold E, Fenical W, Ebright RH.

Elife. 2014 Apr 30;3:e02451. doi: 10.7554/eLife.02451.

PMID:
24843001
[PubMed - in process]
Free PMC Article
3.

Structural basis for promoter specificity switching of RNA polymerase by a phage factor.

Tagami S, Sekine S, Minakhin L, Esyunina D, Akasaka R, Shirouzu M, Kulbachinskiy A, Severinov K, Yokoyama S.

Genes Dev. 2014 Mar 1;28(5):521-31. doi: 10.1101/gad.233916.113.

PMID:
24589779
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis of the mechanism of nucleosome survival during transcription.

Chang HW, Kulaeva OI, Shaytan AK, Kibanov M, Kuznedelov K, Severinov KV, Kirpichnikov MP, Clark DJ, Studitsky VM.

Nucleic Acids Res. 2014 Feb;42(3):1619-27. doi: 10.1093/nar/gkt1120. Epub 2013 Nov 13.

PMID:
24234452
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Inactivation of the bacterial RNA polymerase due to acquisition of secondary structure by the ω subunit.

Sarkar P, Sardesai AA, Murakami KS, Chatterji D.

J Biol Chem. 2013 Aug 30;288(35):25076-87. doi: 10.1074/jbc.M113.468520. Epub 2013 Jul 10.

PMID:
23843456
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

X-ray crystal structure of Escherichia coli RNA polymerase σ70 holoenzyme.

Murakami KS.

J Biol Chem. 2013 Mar 29;288(13):9126-34. doi: 10.1074/jbc.M112.430900. Epub 2013 Feb 6.

PMID:
23389035
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Localization and orientation of heavy-atom cluster compounds in protein crystals using molecular replacement.

Dahms SO, Kuester M, Streb C, Roth C, Sträter N, Than ME.

Acta Crystallogr D Biol Crystallogr. 2013 Feb;69(Pt 2):284-97. doi: 10.1107/S0907444912046008. Epub 2013 Jan 19.

PMID:
23385464
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Structural basis of transcriptional pausing in bacteria.

Weixlbaumer A, Leon K, Landick R, Darst SA.

Cell. 2013 Jan 31;152(3):431-41. doi: 10.1016/j.cell.2012.12.020.

PMID:
23374340
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae.

Kaplan CD.

Biochim Biophys Acta. 2013 Jan;1829(1):39-54. doi: 10.1016/j.bbagrm.2012.09.007. Epub 2012 Sep 26. Review.

PMID:
23022618
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genetic and proteomic characterization of rpoB mutations and their effect on nematicidal activity in Photorhabdus luminescens LN2.

Qiu X, Yan X, Liu M, Han R.

PLoS One. 2012;7(8):e43114. doi: 10.1371/journal.pone.0043114. Epub 2012 Aug 17.

PMID:
22912803
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Opening and closing of the bacterial RNA polymerase clamp.

Chakraborty A, Wang D, Ebright YW, Korlann Y, Kortkhonjia E, Kim T, Chowdhury S, Wigneshweraraj S, Irschik H, Jansen R, Nixon BT, Knight J, Weiss S, Ebright RH.

Science. 2012 Aug 3;337(6094):591-5. doi: 10.1126/science.1218716.

PMID:
22859489
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

σ70 and PhoB activator: getting a better grip.

Canals A, Blanco AG, Coll M.

Transcription. 2012 Jul-Aug;3(4):160-4. doi: 10.4161/trns.20444. Epub 2012 Jul 1. Review.

PMID:
22771992
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Fidaxomicin is an inhibitor of the initiation of bacterial RNA synthesis.

Artsimovitch I, Seddon J, Sears P.

Clin Infect Dis. 2012 Aug;55 Suppl 2:S127-31. doi: 10.1093/cid/cis358.

PMID:
22752861
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparative Study of Cyanobacterial and E. coli RNA Polymerases: Misincorporation, Abortive Transcription, and Dependence on Divalent Cations.

Imashimizu M, Tanaka K, Shimamoto N.

Genet Res Int. 2011;2011:572689. doi: 10.4061/2011/572689. Epub 2011 Oct 12.

PMID:
22567357
[PubMed]
Free PMC Article
15.

Comparison of Pause Predictions of Two Sequence-Dependent Transcription Models.

Bai L, Wang MD.

J Stat Mech. 2010 Dec;2010. pii: P12007.

PMID:
22446379
[PubMed]
Free PMC Article
16.

The Bridge Helix of RNA polymerase acts as a central nanomechanical switchboard for coordinating catalysis and substrate movement.

Weinzierl RO.

Archaea. 2011;2011:608385. doi: 10.1155/2011/608385. Epub 2012 Jan 22. Review.

PMID:
22312317
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A novel phage-encoded transcription antiterminator acts by suppressing bacterial RNA polymerase pausing.

Berdygulova Z, Esyunina D, Miropolskaya N, Mukhamedyarov D, Kuznedelov K, Nickels BE, Severinov K, Kulbachinskiy A, Minakhin L.

Nucleic Acids Res. 2012 May;40(9):4052-63. doi: 10.1093/nar/gkr1285. Epub 2012 Jan 11.

PMID:
22238378
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Crystal structure of the bacteriophage T4 late-transcription coactivator gp33 with the β-subunit flap domain of Escherichia coli RNA polymerase.

Twist KA, Campbell EA, Deighan P, Nechaev S, Jain V, Geiduschek EP, Hochschild A, Darst SA.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):19961-6. doi: 10.1073/pnas.1113328108. Epub 2011 Dec 1.

PMID:
22135460
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A novel conformation of RNA polymerase sheds light on the mechanism of transcription.

Tagami S, Sekine SI, Yokoyama S.

Transcription. 2011 Jul;2(4):162-167.

PMID:
21922057
[PubMed]
Free PMC Article
20.

RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation.

Schneider DA.

Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26. Review.

PMID:
21893173
[PubMed - indexed for MEDLINE]
Free PMC Article

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