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On the number of genomic pacemakers: a geometric approach.

Snir S.

Algorithms Mol Biol. 2014 Dec 31;9(1):26. doi: 10.1186/s13015-014-0026-0. eCollection 2014.


Next generation haplotyping to decipher nuclear genomic interspecific admixture in Citrus species: analysis of chromosome 2.

Curk F, Ancillo G, Garcia-Lor A, Luro F, Perrier X, Jacquemoud-Collet JP, Navarro L, Ollitrault P.

BMC Genet. 2014 Dec 29;15(1):1272. [Epub ahead of print]


An origin-of-life reactor to simulate alkaline hydrothermal vents.

Herschy B, Whicher A, Camprubi E, Watson C, Dartnell L, Ward J, Evans JR, Lane N.

J Mol Evol. 2014 Dec;79(5-6):213-27. doi: 10.1007/s00239-014-9658-4. Epub 2014 Nov 27.


HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers.

Zhu Q, Kosoy M, Dittmar K.

BMC Genomics. 2014 Aug 26;15:717. doi: 10.1186/1471-2164-15-717.


SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report.

Dagan T, Bapteste E, McInerney JO, Martin WF.

Genome Biol Evol. 2014 Aug 12;6(9):2206-9. doi: 10.1093/gbe/evu173. No abstract available.


horizontal transfers and gene losses in the phospholipid pathway of bartonella reveal clues about early ecological niches.

Zhu Q, Kosoy M, Olival KJ, Dittmar K.

Genome Biol Evol. 2014 Aug 8;6(8):2156-69. doi: 10.1093/gbe/evu169.


The inference of gene trees with species trees.

Szöllősi GJ, Tannier E, Daubin V, Boussau B.

Syst Biol. 2015 Jan;64(1):e42-62. doi: 10.1093/sysbio/syu048. Epub 2014 Jul 28.


Archaea: the first domain of diversified life.

Caetano-Anollés G, Nasir A, Zhou K, Caetano-Anollés D, Mittenthal JE, Sun FJ, Kim KM.

Archaea. 2014 Jun 2;2014:590214. doi: 10.1155/2014/590214. eCollection 2014. Review.


The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete.

Cardona G, Llabrés M, Rosselló F, Valiente G.

ScientificWorldJournal. 2014;2014:254279. doi: 10.1155/2014/254279. Epub 2014 Apr 2.


Spaces of the possible: universal Darwinism and the wall between technological and biological innovation.

Wagner A, Rosen W.

J R Soc Interface. 2014 Aug 6;11(97):20131190. doi: 10.1098/rsif.2013.1190. Review.


Repression/depression of conjugative plasmids and their influence on the mutation-selection balance in static environments.

Raz Y, Tannenbaum ED.

PLoS One. 2014 May 8;9(5):e96839. doi: 10.1371/journal.pone.0096839. eCollection 2014.


Ecological and temporal constraints in the evolution of bacterial genomes.

Boto L, Martínez JL.

Genes (Basel). 2011 Oct 31;2(4):804-28. doi: 10.3390/genes2040804.


The drive to life on wet and icy worlds.

Russell MJ, Barge LM, Bhartia R, Bocanegra D, Bracher PJ, Branscomb E, Kidd R, McGlynn S, Meier DH, Nitschke W, Shibuya T, Vance S, White L, Kanik I.

Astrobiology. 2014 Apr;14(4):308-43. doi: 10.1089/ast.2013.1110. Epub 2014 Apr 3.


A fast algorithm for exonic regions prediction in DNA sequences.

Saberkari H, Shamsi M, Heravi H, Sedaaghi MH.

J Med Signals Sens. 2013 Jul;3(3):139-49.


Bacterial genome instability.

Darmon E, Leach DR.

Microbiol Mol Biol Rev. 2014 Mar;78(1):1-39. doi: 10.1128/MMBR.00035-13. Review.


Carl Woese's vision of cellular evolution and the domains of life.

Koonin EV.

RNA Biol. 2014;11(3):197-204. doi: 10.4161/rna.27673. Epub 2014 Jan 16. Review.


A system to simultaneously detect tick-borne pathogens based on the variability of the 16S ribosomal genes.

Melničáková J, Derdáková M, Barák I.

Parasit Vectors. 2013 Sep 18;6:269. doi: 10.1186/1756-3305-6-269.


Phylo SI: a new genome-wide approach for prokaryotic phylogeny.

Shifman A, Ninyo N, Gophna U, Snir S.

Nucleic Acids Res. 2014 Feb;42(4):2391-404. doi: 10.1093/nar/gkt1138. Epub 2013 Nov 15.


Phylogenomic analysis identifies gene gains that define Salmonella enterica subspecies I.

Lienau EK, Blazar JM, Wang C, Brown EW, Stones R, Musser S, Allard MW.

PLoS One. 2013 Oct 28;8(10):e76821. doi: 10.1371/journal.pone.0076821. eCollection 2013.


Topology of viral evolution.

Chan JM, Carlsson G, Rabadan R.

Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18566-71. doi: 10.1073/pnas.1313480110. Epub 2013 Oct 29.

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