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'Z-DNA like' fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response.

D'Ascenzo L, Leonarski F, Vicens Q, Auffinger P.

Nucleic Acids Res. 2016 Jul 8;44(12):5944-56. doi: 10.1093/nar/gkw388. Epub 2016 May 5.


Solution structure of the Z-DNA binding domain of PKR-like protein kinase from Carassius auratus and quantitative analyses of the intermediate complex during B-Z transition.

Lee AR, Park CJ, Cheong HK, Ryu KS, Park JW, Kwon MY, Lee J, Kim KK, Choi BS, Lee JH.

Nucleic Acids Res. 2016 Apr 7;44(6):2936-48. doi: 10.1093/nar/gkw025. Epub 2016 Jan 20.


Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development.

Pestal K, Funk CC, Snyder JM, Price ND, Treuting PM, Stetson DB.

Immunity. 2015 Nov 17;43(5):933-44. doi: 10.1016/j.immuni.2015.11.001.


The Structure of the Cyprinid herpesvirus 3 ORF112-Zα·Z-DNA Complex Reveals a Mechanism of Nucleic Acids Recognition Conserved with E3L, a Poxvirus Inhibitor of Interferon Response.

Kuś K, Rakus K, Boutier M, Tsigkri T, Gabriel L, Vanderplasschen A, Athanasiadis A.

J Biol Chem. 2015 Dec 25;290(52):30713-25. doi: 10.1074/jbc.M115.679407. Epub 2015 Nov 11.


Structure-specific nucleic acid recognition by L-motifs and their diverse roles in expression and regulation of the genome.

Thapar R.

Biochim Biophys Acta. 2015 Jun;1849(6):677-87. doi: 10.1016/j.bbagrm.2015.02.006. Epub 2015 Mar 4. Review.


Regulatory factors governing adenosine-to-inosine (A-to-I) RNA editing.

Hong H, Lin JS, Chen L.

Biosci Rep. 2015 Mar 31;35(2). pii: e00182. doi: 10.1042/BSR20140190. Review.


Ion distributions around left- and right-handed DNA and RNA duplexes: a comparative study.

Pan F, Roland C, Sagui C.

Nucleic Acids Res. 2014 Dec 16;42(22):13981-96. doi: 10.1093/nar/gku1107. Epub 2014 Nov 26.


The structure, function and evolution of proteins that bind DNA and RNA.

Hudson WH, Ortlund EA.

Nat Rev Mol Cell Biol. 2014 Nov;15(11):749-60. doi: 10.1038/nrm3884. Epub 2014 Oct 1. Review.


Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics.

Alvey HS, Gottardo FL, Nikolova EN, Al-Hashimi HM.

Nat Commun. 2014 Sep 4;5:4786. doi: 10.1038/ncomms5786.


Solution structure of the free Zα domain of human DLM-1 (ZBP1/DAI), a Z-DNA binding domain.

Yang Y, Ramelot TA, Lee HW, Xiao R, Everett JK, Montelione GT, Prestegard JH, Kennedy MA.

J Biomol NMR. 2014 Nov;60(2-3):189-95. doi: 10.1007/s10858-014-9858-7. Epub 2014 Aug 31. No abstract available.


Adenosine deaminase acting on RNA 1 limits RIG-I RNA detection and suppresses IFN production responding to viral and endogenous RNAs.

Yang S, Deng P, Zhu Z, Zhu J, Wang G, Zhang L, Chen AF, Wang T, Sarkar SN, Billiar TR, Wang Q.

J Immunol. 2014 Oct 1;193(7):3436-45. doi: 10.4049/jimmunol.1401136. Epub 2014 Aug 29.


Making the bend: DNA tertiary structure and protein-DNA interactions.

Harteis S, Schneider S.

Int J Mol Sci. 2014 Jul 14;15(7):12335-63. doi: 10.3390/ijms150712335. Review.


The ROQ domain of Roquin recognizes mRNA constitutive-decay element and double-stranded RNA.

Tan D, Zhou M, Kiledjian M, Tong L.

Nat Struct Mol Biol. 2014 Aug;21(8):679-85. doi: 10.1038/nsmb.2857. Epub 2014 Jul 13.


An RNA editor, adenosine deaminase acting on double-stranded RNA (ADAR1).

George CX, John L, Samuel CE.

J Interferon Cytokine Res. 2014 Jun;34(6):437-46. doi: 10.1089/jir.2014.0001. Review.


Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ).

Kim D, Hur J, Park K, Bae S, Shin D, Ha SC, Hwang HY, Hohng S, Lee JH, Lee S, Kim YG, Kim KK.

Nucleic Acids Res. 2014 May;42(9):5937-48. doi: 10.1093/nar/gku189. Epub 2014 Mar 20.


Variola virus E3L Zα domain, but not its Z-DNA binding activity, is required for PKR inhibition.

Thakur M, Seo EJ, Dever TE.

RNA. 2014 Feb;20(2):214-27. doi: 10.1261/rna.042341.113. Epub 2013 Dec 13.


Structural fluctuation observed in Z-DNA d(CGCGCG)₂ in the absence of divalent metal cations and polyamines.

Chatake T.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):864-8. doi: 10.1107/S0909049513020773. Epub 2013 Sep 25.


Proteins that contain a functional Z-DNA-binding domain localize to cytoplasmic stress granules.

Ng SK, Weissbach R, Ronson GE, Scadden AD.

Nucleic Acids Res. 2013 Nov;41(21):9786-99. doi: 10.1093/nar/gkt750. Epub 2013 Aug 27.


Structural basis for Z-DNA binding and stabilization by the zebrafish Z-DNA dependent protein kinase PKZ.

de Rosa M, Zacarias S, Athanasiadis A.

Nucleic Acids Res. 2013 Nov;41(21):9924-33. doi: 10.1093/nar/gkt743. Epub 2013 Aug 23.


Lighting up left-handed Z-DNA: photoluminescent carbon dots induce DNA B to Z transition and perform DNA logic operations.

Feng L, Zhao A, Ren J, Qu X.

Nucleic Acids Res. 2013 Sep;41(16):7987-96. doi: 10.1093/nar/gkt575. Epub 2013 Jun 27.

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