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Results: 1 to 20 of 148

1.

The University of Minnesota Biocatalysis/Biodegradation Database: specialized metabolism for functional genomics.

Ellis LB, Hershberger CD, Wackett LP.

Nucleic Acids Res. 1999 Jan 1;27(1):373-6.

PMID:
9847233
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The University of Minnesota Biocatalysis/Biodegradation database: microorganisms, genomics and prediction.

Ellis LB, Hershberger CD, Wackett LP.

Nucleic Acids Res. 2000 Jan 1;28(1):377-9.

PMID:
10592280
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The University of Minnesota Biocatalysis/Biodegradation Database: post-genomic data mining.

Ellis LB, Hou BK, Kang W, Wackett LP.

Nucleic Acids Res. 2003 Jan 1;31(1):262-5.

PMID:
12519997
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Encoding microbial metabolic logic: predicting biodegradation.

Hou BK, Ellis LB, Wackett LP.

J Ind Microbiol Biotechnol. 2004 Jul;31(6):261-72. Epub 2004 Jul 10.

PMID:
15248088
[PubMed - indexed for MEDLINE]
5.

The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes.

Ellis LB, Hershberger CD, Bryan EM, Wackett LP.

Nucleic Acids Res. 2001 Jan 1;29(1):340-3.

PMID:
11125131
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Representing metabolic pathway information: an object-oriented approach.

Ellis LB, Speedie SM, McLeish R.

Bioinformatics. 1998;14(9):803-6.

PMID:
9918950
[PubMed - indexed for MEDLINE]
Free Article
7.

The University of Minnesota Biocatalysis/Biodegradation Database: improving public access.

Gao J, Ellis LB, Wackett LP.

Nucleic Acids Res. 2010 Jan;38(Database issue):D488-91. doi: 10.1093/nar/gkp771. Epub 2009 Sep 18.

PMID:
19767608
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Microbial pathway prediction: a functional group approach.

Hou BK, Wackett LP, Ellis LB.

J Chem Inf Comput Sci. 2003 May-Jun;43(3):1051-7.

PMID:
12767164
[PubMed - indexed for MEDLINE]
9.

BSD: the Biodegradative Strain Database.

Urbance JW, Cole J, Saxman P, Tiedje JM.

Nucleic Acids Res. 2003 Jan 1;31(1):152-5.

PMID:
12519970
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The University of Minnesota Biocatalysis/Biodegradation Database: the first decade.

Ellis LB, Roe D, Wackett LP.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D517-21.

PMID:
16381924
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Novel biocatalysis by database mining.

Wackett LP.

Curr Opin Biotechnol. 2004 Aug;15(4):280-4. Review.

PMID:
15296925
[PubMed - indexed for MEDLINE]
12.

Predicting biodegradation.

Wackett LP, Ellis LB.

Environ Microbiol. 1999 Apr;1(2):119-24. Review.

PMID:
11207727
[PubMed - indexed for MEDLINE]
13.

Biocatalysis, biodegradation and bioinformatics.

Wackett LP.

J Ind Microbiol Biotechnol. 1997 Nov-Dec;19(5-6):350-4. Review.

PMID:
9451831
[PubMed - indexed for MEDLINE]
14.

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Krieger CJ, Zhang P, Mueller LA, Wang A, Paley S, Arnaud M, Pick J, Rhee SY, Karp PD.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D438-42.

PMID:
14681452
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Data-driven extraction of relative reasoning rules to limit combinatorial explosion in biodegradation pathway prediction.

Fenner K, Gao J, Kramer S, Ellis L, Wackett L.

Bioinformatics. 2008 Sep 15;24(18):2079-85. doi: 10.1093/bioinformatics/btn378. Epub 2008 Jul 19.

PMID:
18641402
[PubMed - indexed for MEDLINE]
Free Article
16.

LIGAND database for enzymes, compounds and reactions.

Goto S, Nishioka T, Kanehisa M.

Nucleic Acids Res. 1999 Jan 1;27(1):377-9.

PMID:
9847234
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The University of Minnesota pathway prediction system: predicting metabolic logic.

Ellis LB, Gao J, Fenner K, Wackett LP.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W427-32. doi: 10.1093/nar/gkn315. Epub 2008 Jun 4.

PMID:
18524801
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Directed evolution of new enzymes and pathways for environmental biocatalysis.

Wackett LP.

Ann N Y Acad Sci. 1998 Dec 13;864:142-52. Review.

PMID:
9928089
[PubMed - indexed for MEDLINE]
19.

The organization of the microbial biodegradation network from a systems-biology perspective.

Pazos F, Valencia A, De Lorenzo V.

EMBO Rep. 2003 Oct;4(10):994-9. Epub 2003 Sep 5.

PMID:
12973298
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

LIGAND: database of chemical compounds and reactions in biological pathways.

Goto S, Okuno Y, Hattori M, Nishioka T, Kanehisa M.

Nucleic Acids Res. 2002 Jan 1;30(1):402-4.

PMID:
11752349
[PubMed - indexed for MEDLINE]
Free PMC Article

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