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Results: 1 to 20 of 76

1.

Why are some proteins structures so common?

Govindarajan S, Goldstein RA.

Proc Natl Acad Sci U S A. 1996 Apr 16;93(8):3341-5.

PMID:
8622938
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The distribution of structures in evolving protein populations.

Taverna DM, Goldstein RA.

Biopolymers. 2000 Jan;53(1):1-8.

PMID:
10644946
[PubMed - indexed for MEDLINE]
3.

Physical origins of protein superfamilies.

Zeldovich KB, Berezovsky IN, Shakhnovich EI.

J Mol Biol. 2006 Apr 7;357(4):1335-43. Epub 2006 Feb 6.

PMID:
16483605
[PubMed - indexed for MEDLINE]
4.

Structural classification of thioredoxin-like fold proteins.

Qi Y, Grishin NV.

Proteins. 2005 Feb 1;58(2):376-88.

PMID:
15558583
[PubMed - indexed for MEDLINE]
5.

Evolution of protein structures and functions.

Kinch LN, Grishin NV.

Curr Opin Struct Biol. 2002 Jun;12(3):400-8. Review.

PMID:
12127461
[PubMed - indexed for MEDLINE]
6.

Evolution of protein sequences and structures.

Wood TC, Pearson WR.

J Mol Biol. 1999 Aug 27;291(4):977-95.

PMID:
10452901
[PubMed - indexed for MEDLINE]
7.

Composite motifs integrating multiple protein structures increase sensitivity for function prediction.

Chen BY, Bryant DH, Cruess AE, Bylund JH, Fofanov VY, Kristensen DM, Kimmel M, Lichtarge O, Kavraki LE.

Comput Syst Bioinformatics Conf. 2007;6:343-55.

PMID:
17951837
[PubMed - indexed for MEDLINE]
Free Article
8.

OB-fold domains: a snapshot of the evolution of sequence, structure and function.

Arcus V.

Curr Opin Struct Biol. 2002 Dec;12(6):794-801. Review.

PMID:
12504685
[PubMed - indexed for MEDLINE]
9.

Assessment of the probabilities for evolutionary structural changes in protein folds.

Viksna J, Gilbert D.

Bioinformatics. 2007 Apr 1;23(7):832-41. Epub 2007 Feb 4.

PMID:
17282999
[PubMed - indexed for MEDLINE]
Free Article
10.

A structure-centric view of protein evolution, design, and adaptation.

Deeds EJ, Shakhnovich EI.

Adv Enzymol Relat Areas Mol Biol. 2007;75:133-91, xi-xii. Review.

PMID:
17124867
[PubMed - indexed for MEDLINE]
11.

Contemporary approaches to protein structure classification.

Swindells MB, Orengo CA, Jones DT, Hutchinson EG, Thornton JM.

Bioessays. 1998 Nov;20(11):884-91. Review.

PMID:
9872054
[PubMed - indexed for MEDLINE]
12.

The emergence of scaling in sequence-based physical models of protein evolution.

Deeds EJ, Shakhnovich EI.

Biophys J. 2005 Jun;88(6):3905-11. Epub 2005 Apr 1.

PMID:
15805176
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Recoverable one-dimensional encoding of three-dimensional protein structures.

Kinjo AR, Nishikawa K.

Bioinformatics. 2005 May 15;21(10):2167-70. Epub 2005 Feb 18.

PMID:
15722374
[PubMed - indexed for MEDLINE]
Free Article
14.

Fold change in evolution of protein structures.

Grishin NV.

J Struct Biol. 2001 May-Jun;134(2-3):167-85. Review.

PMID:
11551177
[PubMed - indexed for MEDLINE]
15.

The family feud: do proteins with similar structures fold via the same pathway?

Zarrine-Afsar A, Larson SM, Davidson AR.

Curr Opin Struct Biol. 2005 Feb;15(1):42-9. Review.

PMID:
15718132
[PubMed - indexed for MEDLINE]
16.

Evolution and similarity evaluation of protein structures in contact map space.

Gupta N, Mangal N, Biswas S.

Proteins. 2005 May 1;59(2):196-204.

PMID:
15726585
[PubMed - indexed for MEDLINE]
17.

The PAS fold. A redefinition of the PAS domain based upon structural prediction.

Hefti MH, Fran├žoijs KJ, de Vries SC, Dixon R, Vervoort J.

Eur J Biochem. 2004 Mar;271(6):1198-208.

PMID:
15009198
[PubMed - indexed for MEDLINE]
18.

Adding backbone to protein folding: why proteins are polypeptides.

Honig B, Cohen FE.

Fold Des. 1996;1(1):R17-20. Review.

PMID:
9079357
[PubMed - indexed for MEDLINE]
19.

Connectivity of neutral networks, overdispersion, and structural conservation in protein evolution.

Bastolla U, Porto M, Eduardo Roman MH, Vendruscolo MH.

J Mol Evol. 2003 Mar;56(3):243-54.

PMID:
12612828
[PubMed - indexed for MEDLINE]
20.

Comparing folding codes for proteins and polymers.

Chan HS, Dill KA.

Proteins. 1996 Mar;24(3):335-44.

PMID:
8778780
[PubMed - indexed for MEDLINE]

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