Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 80

1.

A special-purpose processor for gene sequence analysis.

Fagin B, Watt JG, Gross R.

Comput Appl Biosci. 1993 Apr;9(2):221-6.

PMID:
8481828
2.
3.

A memory-efficient algorithm for multiple sequence alignment with constraints.

Lu CL, Huang YP.

Bioinformatics. 2005 Jan 1;21(1):20-30. Epub 2004 Sep 16.

4.

CBESW: sequence alignment on the Playstation 3.

Wirawan A, Kwoh CK, Hieu NT, Schmidt B.

BMC Bioinformatics. 2008 Sep 17;9:377. doi: 10.1186/1471-2105-9-377.

5.

Fine-grained parallel RNAalifold algorithm for RNA secondary structure prediction on FPGA.

Xia F, Dou Y, Zhou X, Yang X, Xu J, Zhang Y.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S37. doi: 10.1186/1471-2105-10-S1-S37.

6.

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment.

Manavski SA, Valle G.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S10. doi: 10.1186/1471-2105-9-S2-S10.

7.

SAMBA: hardware accelerator for biological sequence comparison.

Guerdoux-Jamet P, Lavenier D.

Comput Appl Biosci. 1997 Dec;13(6):609-15.

PMID:
9475989
8.
9.

Multiple sequence alignment with arbitrary gap costs: computing an optimal solution using polyhedral combinatorics.

Althaus E, Caprara A, Lenhof HP, Reinert K.

Bioinformatics. 2002;18 Suppl 2:S4-S16.

10.

FPGA accelerator for protein secondary structure prediction based on the GOR algorithm.

Xia F, Dou Y, Lei G, Tan Y.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S5. doi: 10.1186/1471-2105-12-S1-S5.

11.

Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.

Siddharthan R.

BMC Bioinformatics. 2006 Mar 16;7:143.

13.

Topical perspective on massive threading and parallelism.

Farber RM.

J Mol Graph Model. 2011 Sep;30:82-9. doi: 10.1016/j.jmgm.2011.06.007. Epub 2011 Jun 29. Review.

PMID:
21764615
14.

Reconfigurable systems for sequence alignment and for general dynamic programming.

Jacobi RP, Ayala-Rincón M, Carvalho LG, Llanos CH, Hartenstein RW.

Genet Mol Res. 2005 Sep 30;4(3):543-52.

PMID:
16342039
15.
16.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

17.

ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use.

Kraj P, Sharma A, Garge N, Podolsky R, McIndoe RA.

BMC Bioinformatics. 2008 Apr 16;9:200. doi: 10.1186/1471-2105-9-200.

18.

Fast model-based protein homology detection without alignment.

Hochreiter S, Heusel M, Obermayer K.

Bioinformatics. 2007 Jul 15;23(14):1728-36. Epub 2007 May 8.

20.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

Items per page

Supplemental Content

Write to the Help Desk