Similar articles for PMID: 30893420

Year	Number of Results
1963	1
1997	1
2000	1
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2004	4
2005	3
2006	6
2007	7
2008	3
2009	1
2010	5
2011	6
2012	2
2013	2
2014	3
2015	4
2016	9
2017	10
2018	5
2019	5
2020	2
2021	4
2022	1
2023	2
2024	0

1

AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution.

Correia K, Yu SM, Mahadevan R. Correia K, et al. Database (Oxford). 2019 Jan 1;2019:baz022. doi: 10.1093/database/baz022. Database (Oxford). 2019. PMID: 30893420 Free PMC article.

2

Pan-Genome-Scale Network Reconstruction: Harnessing Phylogenomics Increases the Quantity and Quality of Metabolic Models.

Correia K, Mahadevan R. Correia K, et al. Biotechnol J. 2020 Oct;15(10):e1900519. doi: 10.1002/biot.201900519. Epub 2020 Sep 9. Biotechnol J. 2020. PMID: 32744423

3

Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees.

Boeckmann B, Robinson-Rechavi M, Xenarios I, Dessimoz C. Boeckmann B, et al. Brief Bioinform. 2011 Sep;12(5):423-35. doi: 10.1093/bib/bbr034. Epub 2011 Jul 7. Brief Bioinform. 2011. PMID: 21737420 Free PMC article.

4

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.

Chen F, Mackey AJ, Stoeckert CJ Jr, Roos DS. Chen F, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D363-8. doi: 10.1093/nar/gkj123. Nucleic Acids Res. 2006. PMID: 16381887 Free PMC article.

5

FUNYBASE: a FUNgal phYlogenomic dataBASE.

Marthey S, Aguileta G, Rodolphe F, Gendrault A, Giraud T, Fournier E, Lopez-Villavicencio M, Gautier A, Lebrun MH, Chiapello H. Marthey S, et al. BMC Bioinformatics. 2008 Oct 27;9:456. doi: 10.1186/1471-2105-9-456. BMC Bioinformatics. 2008. PMID: 18954438 Free PMC article.

6

Evaluating ortholog prediction algorithms in a yeast model clade.

Salichos L, Rokas A. Salichos L, et al. PLoS One. 2011 Apr 13;6(4):e18755. doi: 10.1371/journal.pone.0018755. PLoS One. 2011. PMID: 21533202 Free PMC article.

7

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.

Tice AK, Žihala D, Pánek T, Jones RE, Salomaki ED, Nenarokov S, Burki F, Eliáš M, Eme L, Roger AJ, Rokas A, Shen XX, Strassert JFH, Kolísko M, Brown MW. Tice AK, et al. PLoS Biol. 2021 Aug 6;19(8):e3001365. doi: 10.1371/journal.pbio.3001365. eCollection 2021 Aug. PLoS Biol. 2021. PMID: 34358228 Free PMC article.

8

The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.

Heinicke S, Livstone MS, Lu C, Oughtred R, Kang F, Angiuoli SV, White O, Botstein D, Dolinski K. Heinicke S, et al. PLoS One. 2007 Aug 22;2(8):e766. doi: 10.1371/journal.pone.0000766. PLoS One. 2007. PMID: 17712414 Free PMC article.

9

Inferring protein function from homology using the Princeton Protein Orthology Database (P-POD).

Livstone MS, Oughtred R, Heinicke S, Vernot B, Huttenhower C, Durand D, Dolinski K. Livstone MS, et al. Curr Protoc Bioinformatics. 2011 Mar;Chapter 6:Unit 6.11. doi: 10.1002/0471250953.bi0611s33. Curr Protoc Bioinformatics. 2011. PMID: 21400696 Free PMC article.

10

Phylogenetic portrait of the Saccharomyces cerevisiae functional genome.

Gibney PA, Hickman MJ, Bradley PH, Matese JC, Botstein D. Gibney PA, et al. G3 (Bethesda). 2013 Aug 7;3(8):1335-40. doi: 10.1534/g3.113.006585. G3 (Bethesda). 2013. PMID: 23749449 Free PMC article.

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