Similar articles for PMID: 26072478

Year	Number of Results
1929	1
2004	1
2008	2
2009	6
2010	6
2011	4
2012	6
2013	12
2014	12
2015	15
2016	12
2017	15
2018	8
2019	1
2020	3
2021	4
2022	4
2023	2
2024	0

1

Metabolome-scale de novo pathway reconstruction using regioisomer-sensitive graph alignments.

Yamanishi Y, Tabei Y, Kotera M. Yamanishi Y, et al. Bioinformatics. 2015 Jun 15;31(12):i161-70. doi: 10.1093/bioinformatics/btv224. Bioinformatics. 2015. PMID: 26072478 Free PMC article.

2

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.

Kotera M, Tabei Y, Yamanishi Y, Muto A, Moriya Y, Tokimatsu T, Goto S. Kotera M, et al. Bioinformatics. 2014 Jun 15;30(12):i165-74. doi: 10.1093/bioinformatics/btu265. Bioinformatics. 2014. PMID: 24931980 Free PMC article.

3

Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets.

Kotera M, Tabei Y, Yamanishi Y, Tokimatsu T, Goto S. Kotera M, et al. Bioinformatics. 2013 Jul 1;29(13):i135-44. doi: 10.1093/bioinformatics/btt244. Bioinformatics. 2013. PMID: 23812977 Free PMC article.

4

Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction.

Tabei Y, Yamanishi Y, Kotera M. Tabei Y, et al. Bioinformatics. 2016 Jun 15;32(12):i278-i287. doi: 10.1093/bioinformatics/btw260. Bioinformatics. 2016. PMID: 27307627 Free PMC article.

5

Translational Metabolomics of Head Injury: Exploring Dysfunctional Cerebral Metabolism with Ex Vivo NMR Spectroscopy-Based Metabolite Quantification.

Wolahan SM, Hirt D, Glenn TC. Wolahan SM, et al. In: Kobeissy FH, editor. Brain Neurotrauma: Molecular, Neuropsychological, and Rehabilitation Aspects. Boca Raton (FL): CRC Press/Taylor & Francis; 2015. Chapter 25. In: Kobeissy FH, editor. Brain Neurotrauma: Molecular, Neuropsychological, and Rehabilitation Aspects. Boca Raton (FL): CRC Press/Taylor & Francis; 2015. Chapter 25. PMID: 26269925 Free Books & Documents. Review.

6

Automated pathway and reaction prediction facilitates in silico identification of unknown metabolites in human cohort studies.

Quell JD, Römisch-Margl W, Colombo M, Krumsiek J, Evans AM, Mohney R, Salomaa V, de Faire U, Groop LC, Agakov F, Looker HC, McKeigue P, Colhoun HM, Kastenmüller G. Quell JD, et al. J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Dec 15;1071:58-67. doi: 10.1016/j.jchromb.2017.04.002. Epub 2017 Apr 4. J Chromatogr B Analyt Technol Biomed Life Sci. 2017. PMID: 28479069 Free article.

7

MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.

Kotera M, Tokimatsu T, Kanehisa M, Goto S. Kotera M, et al. BMC Bioinformatics. 2011 Dec 14;12 Suppl 14(Suppl 14):S1. doi: 10.1186/1471-2105-12-S14-S1. BMC Bioinformatics. 2011. PMID: 22373367 Free PMC article.

8

Metabolic pathfinding using RPAIR annotation.

Faust K, Croes D, van Helden J. Faust K, et al. J Mol Biol. 2009 May 1;388(2):390-414. doi: 10.1016/j.jmb.2009.03.006. Epub 2009 Mar 10. J Mol Biol. 2009. PMID: 19281817

9

Genome-scale enzymatic reaction prediction by variational graph autoencoders.

Wang C, Yuan C, Wang Y, Chen R, Shi Y, Patti GJ, Hou Q. Wang C, et al. bioRxiv [Preprint]. 2023 Mar 12:2023.03.08.531729. doi: 10.1101/2023.03.08.531729. bioRxiv. 2023. PMID: 36945484 Free PMC article. Updated. Preprint.

10

A genome-scale metabolic network alignment method within a hypergraph-based framework using a rotational tensor-vector product.

Shen T, Zhang Z, Chen Z, Gu D, Liang S, Xu Y, Li R, Wei Y, Liu Z, Yi Y, Xie X. Shen T, et al. Sci Rep. 2018 Nov 6;8(1):16376. doi: 10.1038/s41598-018-34692-1. Sci Rep. 2018. PMID: 30401914 Free PMC article.

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