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Items: 1 to 20 of 112

1.

ABC inference of multi-population divergence with admixture from unphased population genomic data.

Robinson JD, Bunnefeld L, Hearn J, Stone GN, Hickerson MJ.

Mol Ecol. 2014 Sep;23(18):4458-71. doi: 10.1111/mec.12881. Epub 2014 Sep 6.

2.

Likelihood-based inference of population history from low-coverage de novo genome assemblies.

Hearn J, Stone GN, Bunnefeld L, Nicholls JA, Barton NH, Lohse K.

Mol Ecol. 2014 Jan;23(1):198-211. doi: 10.1111/mec.12578.

PMID:
24188568
3.
4.

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0).

Cornuet JM, Ravigné V, Estoup A.

BMC Bioinformatics. 2010 Jul 28;11:401. doi: 10.1186/1471-2105-11-401.

5.

Population divergence with or without admixture: selecting models using an ABC approach.

Sousa VC, Beaumont MA, Fernandes P, Coelho MM, Chikhi L.

Heredity (Edinb). 2012 May;108(5):521-30. doi: 10.1038/hdy.2011.116. Epub 2011 Dec 7.

6.

Demographic inferences using short-read genomic data in an approximate Bayesian computation framework: in silico evaluation of power, biases and proof of concept in Atlantic walrus.

Shafer AB, Gattepaille LM, Stewart RE, Wolf JB.

Mol Ecol. 2015 Jan;24(2):328-45. doi: 10.1111/mec.13034. Epub 2015 Jan 10.

PMID:
25482153
7.

AABC: approximate approximate Bayesian computation for inference in population-genetic models.

Buzbas EO, Rosenberg NA.

Theor Popul Biol. 2015 Feb;99:31-42. doi: 10.1016/j.tpb.2014.09.002. Epub 2014 Sep 26.

8.

Approximate bayesian computation without summary statistics: the case of admixture.

Sousa VC, Fritz M, Beaumont MA, Chikhi L.

Genetics. 2009 Apr;181(4):1507-19. doi: 10.1534/genetics.108.098129. Epub 2009 Feb 2.

9.

Influence of gene flow on divergence dating - implications for the speciation history of Takydromus grass lizards.

Tseng SP, Li SH, Hsieh CH, Wang HY, Lin SM.

Mol Ecol. 2014 Oct;23(19):4770-84. doi: 10.1111/mec.12889. Epub 2014 Sep 17.

PMID:
25142551
10.

Combined next-generation sequencing and morphology reveal fine-scale speciation in Crocodile Skinks (Squamata: Scincidae: Tribolonotus).

Rittmeyer EN, Austin CC.

Mol Ecol. 2015 Jan;24(2):466-83. doi: 10.1111/mec.13030. Epub 2015 Jan 9.

PMID:
25470077
11.

Inferring the mode of origin of polyploid species from next-generation sequence data.

Roux C, Pannell JR.

Mol Ecol. 2015 Mar;24(5):1047-59. doi: 10.1111/mec.13078. Epub 2015 Feb 10.

PMID:
25585898
12.

Impact of sampling schemes on demographic inference: an empirical study in two species with different mating systems and demographic histories.

St Onge KR, Palmé AE, Wright SI, Lascoux M.

G3 (Bethesda). 2012 Jul;2(7):803-14. doi: 10.1534/g3.112.002410. Epub 2012 Jul 1.

13.

Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates.

Aeschbacher S, Futschik A, Beaumont MA.

Mol Ecol. 2013 Feb;22(4):987-1002. doi: 10.1111/mec.12165. Epub 2013 Jan 10.

PMID:
23301635
14.

Complementarity of statistical treatments to reconstruct worldwide routes of invasion: the case of the Asian ladybird Harmonia axyridis.

Lombaert E, Guillemaud T, Lundgren J, Koch R, Facon B, Grez A, Loomans A, Malausa T, Nedved O, Rhule E, Staverlokk A, Steenberg T, Estoup A.

Mol Ecol. 2014 Dec;23(24):5979-97. doi: 10.1111/mec.12989. Epub 2014 Dec 11.

PMID:
25369988
15.

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.

Gautier M, Foucaud J, Gharbi K, Cézard T, Galan M, Loiseau A, Thomson M, Pudlo P, Kerdelhué C, Estoup A.

Mol Ecol. 2013 Jul;22(14):3766-79. doi: 10.1111/mec.12360. Epub 2013 Jun 4.

PMID:
23730833
16.

Kernel approximate Bayesian computation in population genetic inferences.

Nakagome S, Fukumizu K, Mano S.

Stat Appl Genet Mol Biol. 2013 Dec;12(6):667-78. doi: 10.1515/sagmb-2012-0050.

PMID:
24150124
17.

MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity.

Huang W, Takebayashi N, Qi Y, Hickerson MJ.

BMC Bioinformatics. 2011 Jan 3;12:1. doi: 10.1186/1471-2105-12-1.

18.

Model choice for phylogeographic inference using a large set of models.

Pelletier TA, Carstens BC.

Mol Ecol. 2014 Jun;23(12):3028-43. doi: 10.1111/mec.12722. Epub 2014 Apr 25.

PMID:
24650161
19.

ABC as a flexible framework to estimate demography over space and time: some cons, many pros.

Bertorelle G, Benazzo A, Mona S.

Mol Ecol. 2010 Jul;19(13):2609-25. doi: 10.1111/j.1365-294X.2010.04690.x. Epub 2010 Jun 18. Review.

PMID:
20561199
20.

Sampling strategies for frequency spectrum-based population genomic inference.

Robinson JD, Coffman AJ, Hickerson MJ, Gutenkunst RN.

BMC Evol Biol. 2014 Dec 4;14:254. doi: 10.1186/s12862-014-0254-4.

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