Similar articles for PMID: 25058338

Year	Number of Results
2005	3
2006	1
2007	3
2008	4
2009	2
2010	5
2011	5
2012	10
2013	7
2014	17
2015	13
2016	7
2017	6
2018	5
2019	9
2020	2
2021	8
2022	4
2024	0

1

Web-based computational chemistry education with CHARMMing II: Coarse-grained protein folding.

Pickard FC 4th, Miller BT, Schalk V, Lerner MG, Woodcock HL 3rd, Brooks BR. Pickard FC 4th, et al. PLoS Comput Biol. 2014 Jul 24;10(7):e1003738. doi: 10.1371/journal.pcbi.1003738. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25058338 Free PMC article.

2

Web-based computational chemistry education with CHARMMing III: Reduction potentials of electron transfer proteins.

Perrin BS Jr, Miller BT, Schalk V, Woodcock HL, Brooks BR, Ichiye T. Perrin BS Jr, et al. PLoS Comput Biol. 2014 Jul 24;10(7):e1003739. doi: 10.1371/journal.pcbi.1003739. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25058418 Free PMC article.

3

Web-based computational chemistry education with CHARMMing I: Lessons and tutorial.

Miller BT, Singh RP, Schalk V, Pevzner Y, Sun J, Miller CS, Boresch S, Ichiye T, Brooks BR, Woodcock HL 3rd. Miller BT, et al. PLoS Comput Biol. 2014 Jul 24;10(7):e1003719. doi: 10.1371/journal.pcbi.1003719. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25057988 Free PMC article.

4

CHARMMing: a new, flexible web portal for CHARMM.

Miller BT, Singh RP, Klauda JB, Hodoscek M, Brooks BR, Woodcock HL 3rd. Miller BT, et al. J Chem Inf Model. 2008 Sep;48(9):1920-9. doi: 10.1021/ci800133b. Epub 2008 Aug 13. J Chem Inf Model. 2008. PMID: 18698840 Free PMC article.

5

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA. Foffi G, et al. Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2. Phys Biol. 2013. PMID: 23912807

6

Fragment-based docking: development of the CHARMMing Web user interface as a platform for computer-aided drug design.

Pevzner Y, Frugier E, Schalk V, Caflisch A, Woodcock HL. Pevzner Y, et al. J Chem Inf Model. 2014 Sep 22;54(9):2612-20. doi: 10.1021/ci500322k. Epub 2014 Sep 10. J Chem Inf Model. 2014. PMID: 25151852 Free PMC article.

7

CHARMM-GUI 10 years for biomolecular modeling and simulation.

Jo S, Cheng X, Lee J, Kim S, Park SJ, Patel DS, Beaven AH, Lee KI, Rui H, Park S, Lee HS, Roux B, MacKerell AD Jr, Klauda JB, Qi Y, Im W. Jo S, et al. J Comput Chem. 2017 Jun 5;38(15):1114-1124. doi: 10.1002/jcc.24660. Epub 2016 Nov 14. J Comput Chem. 2017. PMID: 27862047 Free PMC article. Review.

8

Protocols for efficient simulations of long-time protein dynamics using coarse-grained CABS model.

Jamroz M, Kolinski A, Kmiecik S. Jamroz M, et al. Methods Mol Biol. 2014;1137:235-50. doi: 10.1007/978-1-4939-0366-5_16. Methods Mol Biol. 2014. PMID: 24573485

9

CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.

Jo S, Cheng X, Islam SM, Huang L, Rui H, Zhu A, Lee HS, Qi Y, Han W, Vanommeslaeghe K, MacKerell AD Jr, Roux B, Im W. Jo S, et al. Adv Protein Chem Struct Biol. 2014;96:235-65. doi: 10.1016/bs.apcsb.2014.06.002. Epub 2014 Aug 24. Adv Protein Chem Struct Biol. 2014. PMID: 25443960 Free PMC article. Review.

10

ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.

Konc J, Miller BT, Štular T, Lešnik S, Woodcock HL, Brooks BR, Janežič D. Konc J, et al. J Chem Inf Model. 2015 Nov 23;55(11):2308-14. doi: 10.1021/acs.jcim.5b00534. Epub 2015 Nov 9. J Chem Inf Model. 2015. PMID: 26509288 Free PMC article.

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