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Items: 1 to 20 of 124

1.

Open reading frames associated with cancer in the dark matter of the human genome.

Delgado AP, Brandao P, Chapado MJ, Hamid S, Narayanan R.

Cancer Genomics Proteomics. 2014 Jul-Aug;11(4):201-13.

PMID:
25048349
2.

Druggable cancer secretome: neoplasm-associated traits.

Narayanan R.

Cancer Genomics Proteomics. 2015 May-Jun;12(3):119-31.

PMID:
25977171
3.

Phenome-genome association studies of pancreatic cancer: new targets for therapy and diagnosis.

Narayanan R.

Cancer Genomics Proteomics. 2015 Jan-Feb;12(1):9-19.

PMID:
25560640
4.

A novel transmembrane glycoprotein cancer biomarker present in the X chromosome.

Delgado AP, Hamid S, Brandao P, Narayanan R.

Cancer Genomics Proteomics. 2014 Mar-Apr;11(2):81-92.

PMID:
24709545
5.

Use of genome-wide association studies for cancer research and drug repositioning.

Zhang J, Jiang K, Lv L, Wang H, Shen Z, Gao Z, Wang B, Yang Y, Ye Y, Wang S.

PLoS One. 2015 Mar 24;10(3):e0116477. doi: 10.1371/journal.pone.0116477. eCollection 2015.

6.

A genome annotation-driven approach to cloning the human ORFeome.

Collins JE, Wright CL, Edwards CA, Davis MP, Grinham JA, Cole CG, Goward ME, Aguado B, Mallya M, Mokrab Y, Huckle EJ, Beare DM, Dunham I.

Genome Biol. 2004;5(10):R84. Epub 2004 Sep 30.

7.

Direct detection of alternative open reading frames translation products in human significantly expands the proteome.

Vanderperre B, Lucier JF, Bissonnette C, Motard J, Tremblay G, Vanderperre S, Wisztorski M, Salzet M, Boisvert FM, Roucou X.

PLoS One. 2013 Aug 12;8(8):e70698. doi: 10.1371/journal.pone.0070698. eCollection 2013.

8.

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.

King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R.

Genome Biol. 2006;7(11):R106.

9.

Gene model detection using mass spectrometry.

Nanduri B, Wang N, Lawrence ML, Bridges SM, Burgess SC.

Methods Mol Biol. 2010;604:137-44. doi: 10.1007/978-1-60761-444-9_10.

PMID:
20013369
10.

C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions.

Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, Vidal M.

Genome Res. 2004 Oct;14(10B):2064-9.

11.

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ.

Genome Biol. 2006;7(4):R35. Epub 2006 Apr 28.

12.

A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF.

Zhao L, Liu L, Leng W, Wei C, Jin Q.

BMC Genomics. 2011 Oct 28;12:528. doi: 10.1186/1471-2164-12-528.

13.

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.

Gascoigne DK, Cheetham SW, Cattenoz PB, Clark MB, Amaral PP, Taft RJ, Wilhelm D, Dinger ME, Mattick JS.

Bioinformatics. 2012 Dec 1;28(23):3042-50. doi: 10.1093/bioinformatics/bts582. Epub 2012 Oct 7.

14.

tsORFdb: theoretical small open reading frames (ORFs) database and massProphet: peptide mass fingerprinting (PMF) tool for unknown small functional ORFs.

Heo HS, Lee S, Kim JM, Choi YJ, Chung HY, Oh SJ.

Biochem Biophys Res Commun. 2010 Jun 18;397(1):120-6. doi: 10.1016/j.bbrc.2010.05.093. Epub 2010 May 23.

PMID:
20501322
15.

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?

Uyar B, Weatheritt RJ, Dinkel H, Davey NE, Gibson TJ.

Mol Biosyst. 2014 Oct;10(10):2626-42. doi: 10.1039/c4mb00290c.

16.

Whole-genome sequence-based analysis of high-density lipoprotein cholesterol.

Morrison AC, Voorman A, Johnson AD, Liu X, Yu J, Li A, Muzny D, Yu F, Rice K, Zhu C, Bis J, Heiss G, O'Donnell CJ, Psaty BM, Cupples LA, Gibbs R, Boerwinkle E; Cohorts for Heart and Aging Research in Genetic Epidemiology (CHARGE) Consortium.

Nat Genet. 2013 Aug;45(8):899-901. doi: 10.1038/ng.2671. Epub 2013 Jun 16.

17.

The use of genome-wide eQTL associations in lymphoblastoid cell lines to identify novel genetic pathways involved in complex traits.

Min JL, Taylor JM, Richards JB, Watts T, Pettersson FH, Broxholme J, Ahmadi KR, Surdulescu GL, Lowy E, Gieger C, Newton-Cheh C, Perola M, Soranzo N, Surakka I, Lindgren CM, Ragoussis J, Morris AP, Cardon LR, Spector TD, Zondervan KT.

PLoS One. 2011;6(7):e22070. doi: 10.1371/journal.pone.0022070. Epub 2011 Jul 15.

18.

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, Moore T, Hudson JR Jr, Hartley JL, Brasch MA, Vandenhaute J, Boulton S, Endress GA, Jenna S, Chevet E, Papasotiropoulos V, Tolias PP, Ptacek J, Snyder M, Huang R, Chance MR, Lee H, Doucette-Stamm L, Hill DE, Vidal M.

Nat Genet. 2003 May;34(1):35-41.

PMID:
12679813
19.

hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.

Lamesch P, Li N, Milstein S, Fan C, Hao T, Szabo G, Hu Z, Venkatesan K, Bethel G, Martin P, Rogers J, Lawlor S, McLaren S, Dricot A, Borick H, Cusick ME, Vandenhaute J, Dunham I, Hill DE, Vidal M.

Genomics. 2007 Mar;89(3):307-15. Epub 2007 Jan 5.

20.

Computational tools for discovery and interpretation of expression quantitative trait loci.

Wright FA, Shabalin AA, Rusyn I.

Pharmacogenomics. 2012 Feb;13(3):343-52. doi: 10.2217/pgs.11.185. Review.

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