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Results: 1 to 20 of 99

1.

Comparative analysis of deep-sea bacterioplankton OMICS revealed the occurrence of habitat-specific genomic attributes.

Smedile F, Messina E, La Cono V, Yakimov MM.

Mar Genomics. 2014 Oct;17C:1-8. doi: 10.1016/j.margen.2014.06.001. Epub 2014 Jun 14. Review.

PMID:
24937756
[PubMed - as supplied by publisher]
2.

Temporal change in deep-sea benthic ecosystems: a review of the evidence from recent time-series studies.

Glover AG, Gooday AJ, Bailey DM, Billett DS, Chevaldonné P, Colaço A, Copley J, Cuvelier D, Desbruyères D, Kalogeropoulou V, Klages M, Lampadariou N, Lejeusne C, Mestre NC, Paterson GL, Perez T, Ruhl H, Sarrazin J, Soltwedel T, Soto EH, Thatje S, Tselepides A, Van Gaever S, Vanreusel A.

Adv Mar Biol. 2010;58:1-95. doi: 10.1016/B978-0-12-381015-1.00001-0. Review.

PMID:
20959156
[PubMed - indexed for MEDLINE]
3.

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep.

Smedile F, Messina E, La Cono V, Tsoy O, Monticelli LS, Borghini M, Giuliano L, Golyshin PN, Mushegian A, Yakimov MM.

Environ Microbiol. 2013 Jan;15(1):167-82. doi: 10.1111/j.1462-2920.2012.02827.x. Epub 2012 Jul 25.

PMID:
22827264
[PubMed - indexed for MEDLINE]
4.

Insights into deep-sea sediment fungal communities from the East Indian Ocean using targeted environmental sequencing combined with traditional cultivation.

Zhang XY, Tang GL, Xu XY, Nong XH, Qi SH.

PLoS One. 2014 Oct 1;9(10):e109118. doi: 10.1371/journal.pone.0109118. eCollection 2014.

PMID:
25272044
[PubMed - in process]
Free PMC Article
5.

Integrated metagenomic and metatranscriptomic analyses of microbial communities in the meso- and bathypelagic realm of north pacific ocean.

Wu J, Gao W, Johnson RH, Zhang W, Meldrum DR.

Mar Drugs. 2013 Oct 11;11(10):3777-801. doi: 10.3390/md11103777.

PMID:
24152557
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries.

Xie W, Wang F, Guo L, Chen Z, Sievert SM, Meng J, Huang G, Li Y, Yan Q, Wu S, Wang X, Chen S, He G, Xiao X, Xu A.

ISME J. 2011 Mar;5(3):414-26. doi: 10.1038/ismej.2010.144. Epub 2010 Oct 7.

PMID:
20927138
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth.

Brown A, Thatje S.

Biol Rev Camb Philos Soc. 2014 May;89(2):406-26. doi: 10.1111/brv.12061. Epub 2013 Oct 4.

PMID:
24118851
[PubMed - in process]
Free PMC Article
8.

Pole-to-pole biogeography of surface and deep marine bacterial communities.

Ghiglione JF, Galand PE, Pommier T, Pedrós-Alió C, Maas EW, Bakker K, Bertilson S, Kirchmanj DL, Lovejoy C, Yager PL, Murray AE.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17633-8. doi: 10.1073/pnas.1208160109. Epub 2012 Oct 8.

PMID:
23045668
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Evolution of divergent life history strategies in marine alphaproteobacteria.

Luo H, Csuros M, Hughes AL, Moran MA.

MBio. 2013 Jul 9;4(4). pii: e00373-13. doi: 10.1128/mBio.00373-13.

PMID:
23839216
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments.

Bik HM, Sung W, De Ley P, Baldwin JG, Sharma J, Rocha-Olivares A, Thomas WK.

Mol Ecol. 2012 Mar;21(5):1048-59. doi: 10.1111/j.1365-294X.2011.05297.x. Epub 2011 Oct 10.

PMID:
21985648
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics.

Urich T, Lanzén A, Stokke R, Pedersen RB, Bayer C, Thorseth IH, Schleper C, Steen IH, Ovreas L.

Environ Microbiol. 2014 Sep;16(9):2699-710. doi: 10.1111/1462-2920.12283. Epub 2013 Oct 27.

PMID:
24112684
[PubMed - in process]
12.

Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria.

Anantharaman K, Breier JA, Sheik CS, Dick GJ.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):330-5. doi: 10.1073/pnas.1215340110. Epub 2012 Dec 20.

PMID:
23263870
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre.

Konstantinidis KT, Braff J, Karl DM, DeLong EF.

Appl Environ Microbiol. 2009 Aug;75(16):5345-55. doi: 10.1128/AEM.00473-09. Epub 2009 Jun 19.

PMID:
19542347
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Computational meta'omics for microbial community studies.

Segata N, Boernigen D, Tickle TL, Morgan XC, Garrett WS, Huttenhower C.

Mol Syst Biol. 2013 May 14;9:666. doi: 10.1038/msb.2013.22. Review.

PMID:
23670539
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.

Thrash JC, Temperton B, Swan BK, Landry ZC, Woyke T, DeLong EF, Stepanauskas R, Giovannoni SJ.

ISME J. 2014 Jul;8(7):1440-51. doi: 10.1038/ismej.2013.243. Epub 2014 Jan 23.

PMID:
24451205
[PubMed - indexed for MEDLINE]
16.

Distinctive microbial community structure in highly stratified deep-sea brine water columns.

Bougouffa S, Yang JK, Lee OO, Wang Y, Batang Z, Al-Suwailem A, Qian PY.

Appl Environ Microbiol. 2013 Jun;79(11):3425-37. doi: 10.1128/AEM.00254-13. Epub 2013 Mar 29.

PMID:
23542623
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Low endemism, continued deep-shallow interchanges, and evidence for cosmopolitan distributions in free-living marine nematodes (order Enoplida).

Bik HM, Thomas WK, Lunt DH, Lambshead PJ.

BMC Evol Biol. 2010 Dec 18;10:389. doi: 10.1186/1471-2148-10-389.

PMID:
21167065
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Large-scale distribution and activity of prokaryotes in deep-sea surface sediments of the Mediterranean Sea and the adjacent Atlantic Ocean.

Giovannelli D, Molari M, d'Errico G, Baldrighi E, Pala C, Manini E.

PLoS One. 2013 Aug 28;8(8):e72996. doi: 10.1371/journal.pone.0072996. eCollection 2013.

PMID:
24039667
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Metagenomics of the deep Mediterranean, a warm bathypelagic habitat.

Martín-Cuadrado AB, López-García P, Alba JC, Moreira D, Monticelli L, Strittmatter A, Gottschalk G, Rodríguez-Valera F.

PLoS One. 2007 Sep 19;2(9):e914.

PMID:
17878949
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Non-random assembly of bacterioplankton communities in the subtropical north pacific ocean.

Eiler A, Hayakawa DH, Rappé MS.

Front Microbiol. 2011 Jul 1;2:140. doi: 10.3389/fmicb.2011.00140. eCollection 2011.

PMID:
21747815
[PubMed]
Free PMC Article

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