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Results: 1 to 20 of 113

Similar articles for PubMed (Select 24936976)

1.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

2.

Omics Metadata Management Software (OMMS).

Perez-Arriaga MO, Wilson S, Williams KP, Schoeniger J, Waymire RL, Powell AJ.

Bioinformation. 2015 Apr 30;11(4):165-72. doi: 10.6026/97320630011165. eCollection 2015.

3.

The center for expanded data annotation and retrieval.

Musen MA, Bean CA, Cheung KH, Dumontier M, Durante KA, Gevaert O, Gonzalez-Beltran A, Khatri P, Kleinstein SH, O'Connor MJ, Pouliot Y, Rocca-Serra P, Sansone SA, Wiser JA; CEDAR team.

J Am Med Inform Assoc. 2015 Jun 25. pii: ocv048. doi: 10.1093/jamia/ocv048. [Epub ahead of print]

PMID:
26112029
4.

The Disease Ontology: fostering interoperability between biological and clinical human disease-related data.

Schriml LM, Mitraka E.

Mamm Genome. 2015 Jun 21. [Epub ahead of print]

PMID:
26093607
5.

Towards recommendations for metadata and data handling in plant phenotyping.

Krajewski P, Chen D, Ćwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S.

J Exp Bot. 2015 Jun 4. pii: erv271. [Epub ahead of print]

PMID:
26044092
6.

The role of pathogen genomics in assessing disease transmission.

Sintchenko V, Holmes EC.

BMJ. 2015 May 11;350:h1314. doi: 10.1136/bmj.h1314. Review.

7.

Pain and Interoception Imaging Network (PAIN): A multimodal, multisite, brain-imaging repository for chronic somatic and visceral pain disorders.

Labus JS, Naliboff B, Kilpatrick L, Liu C, Ashe-McNalley C, Dos Santos IR, Alaverdyan M, Woodworth D, Gupta A, Ellingson BM, Tillisch K, Mayer EA.

Neuroimage. 2015 Apr 19. pii: S1053-8119(15)00308-0. doi: 10.1016/j.neuroimage.2015.04.018. [Epub ahead of print]

PMID:
25902408
8.

An Ontology-Based GIS for Genomic Data Management of Rumen Microbes.

Jelokhani-Niaraki S, Tahmoorespur M, Minuchehr Z, Nassiri MR.

Genomics Inform. 2015 Mar;13(1):7-14. doi: 10.5808/GI.2015.13.1.7. Epub 2015 Mar 31.

9.

Metazen - metadata capture for metagenomes.

Bischof J, Harrison T, Paczian T, Glass E, Wilke A, Meyer F.

Stand Genomic Sci. 2014 Dec 8;9:18. doi: 10.1186/1944-3277-9-18. eCollection 2014.

10.

Ontology application and use at the ENCODE DCC.

Malladi VS, Erickson DT, Podduturi NR, Rowe LD, Chan ET, Davidson JM, Hitz BC, Ho M, Lee BT, Miyasato S, Roe GR, Simison M, Sloan CA, Strattan JS, Tanaka F, Kent WJ, Cherry JM, Hong EL.

Database (Oxford). 2015 Mar 16;2015. pii: bav010. doi: 10.1093/database/bav010. Print 2015.

11.

Mitogenome metadata: current trends and proposed standards.

Strohm JH, Gwiazdowski RA, Hanner R.

Mitochondrial DNA. 2015 Feb 19:1-7. [Epub ahead of print]

PMID:
25693692
12.

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.

Rocca-Serra P, Walls R, Parnell J, Gallery R, Zheng J, Sansone SA, Gonzalez-Beltran A.

Database (Oxford). 2015 Jan 28;2015. pii: bau132. doi: 10.1093/database/bau132. Print 2015.

13.

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases.

Giraldo-Calderón GI, Emrich SJ, MacCallum RM, Maslen G, Dialynas E, Topalis P, Ho N, Gesing S; VectorBase Consortium, Madey G, Collins FH, Lawson D.

Nucleic Acids Res. 2015 Jan;43(Database issue):D707-13. doi: 10.1093/nar/gku1117. Epub 2014 Dec 15.

14.

linkedISA: semantic representation of ISA-Tab experimental metadata.

González-Beltrán A, Maguire E, Sansone SA, Rocca-Serra P.

BMC Bioinformatics. 2014;15 Suppl 14:S4. doi: 10.1186/1471-2105-15-S14-S4. Epub 2014 Nov 27.

15.

Genomic analysis of emerging pathogens: methods, application and future trends.

Li LM, Grassly NC, Fraser C.

Genome Biol. 2014 Nov 22;15(11):541. doi: 10.1186/s13059-014-0541-9.

16.

Epidemiologic data and pathogen genome sequences: a powerful synergy for public health.

Grad YH, Lipsitch M.

Genome Biol. 2014 Nov 18;15(11):538. doi: 10.1186/s13059-014-0538-4.

17.

Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.

Kuhn JH, Andersen KG, Bào Y, Bavari S, Becker S, Bennett RS, Bergman NH, Blinkova O, Bradfute S, Brister JR, Bukreyev A, Chandran K, Chepurnov AA, Davey RA, Dietzgen RG, Doggett NA, Dolnik O, Dye JM, Enterlein S, Fenimore PW, Formenty P, Freiberg AN, Garry RF, Garza NL, Gire SK, Gonzalez JP, Griffiths A, Happi CT, Hensley LE, Herbert AS, Hevey MC, Hoenen T, Honko AN, Ignatyev GM, Jahrling PB, Johnson JC, Johnson KM, Kindrachuk J, Klenk HD, Kobinger G, Kochel TJ, Lackemeyer MG, Lackner DF, Leroy EM, Lever MS, Mühlberger E, Netesov SV, Olinger GG, Omilabu SA, Palacios G, Panchal RG, Park DJ, Patterson JL, Paweska JT, Peters CJ, Pettitt J, Pitt L, Radoshitzky SR, Ryabchikova EI, Saphire EO, Sabeti PC, Sealfon R, Shestopalov AM, Smither SJ, Sullivan NJ, Swanepoel R, Takada A, Towner JS, van der Groen G, Volchkov VE, Volchkova VA, Wahl-Jensen V, Warren TK, Warfield KL, Weidmann M, Nichol ST.

Viruses. 2014 Sep 26;6(9):3663-82. doi: 10.3390/v6093663.

18.

A methodology for a minimum data set for rare diseases to support national centers of excellence for healthcare and research.

Choquet R, Maaroufi M, de Carrara A, Messiaen C, Luigi E, Landais P.

J Am Med Inform Assoc. 2015 Jan;22(1):76-85. doi: 10.1136/amiajnl-2014-002794. Epub 2014 Jul 18.

PMID:
25038198
19.

Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies.

Walls RL, Deck J, Guralnick R, Baskauf S, Beaman R, Blum S, Bowers S, Buttigieg PL, Davies N, Endresen D, Gandolfo MA, Hanner R, Janning A, Krishtalka L, Matsunaga A, Midford P, Morrison N, Ó Tuama É, Schildhauer M, Smith B, Stucky BJ, Thomer A, Wieczorek J, Whitacre J, Wooley J.

PLoS One. 2014 Mar 3;9(3):e89606. doi: 10.1371/journal.pone.0089606. eCollection 2014.

20.

Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and Diverse High-Throughput Screening Data from the Library of Integrated Network-based Cellular Signatures (LINCS).

Vempati UD, Chung C, Mader C, Koleti A, Datar N, Vidović D, Wrobel D, Erickson S, Muhlich JL, Berriz G, Benes CH, Subramanian A, Pillai A, Shamu CE, Schürer SC.

J Biomol Screen. 2014 Feb 11;19(5):803-816. [Epub ahead of print]

PMID:
24518066
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