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Results: 1 to 20 of 148

Similar articles for PubMed (Select 24934636)

1.

Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis.

Yilmazel B, Hu Y, Sigoillot F, Smith JA, Shamu CE, Perrimon N, Mohr SE.

BMC Bioinformatics. 2014 Jun 17;15:192. doi: 10.1186/1471-2105-15-192.

2.

Prevalence of off-target effects in Drosophila RNA interference screens.

Ma Y, Creanga A, Lum L, Beachy PA.

Nature. 2006 Sep 21;443(7109):359-63. Epub 2006 Sep 10.

PMID:
16964239
3.

A bioinformatics method identifies prominent off-targeted transcripts in RNAi screens.

Sigoillot FD, Lyman S, Huckins JF, Adamson B, Chung E, Quattrochi B, King RW.

Nat Methods. 2012 Feb 19;9(4):363-6. doi: 10.1038/nmeth.1898.

4.

Advances in genome-wide RNAi cellular screens: a case study using the Drosophila JAK/STAT pathway.

Fisher KH, Wright VM, Taylor A, Zeidler MP, Brown S.

BMC Genomics. 2012 Sep 24;13:506. doi: 10.1186/1471-2164-13-506.

5.

Reduced seed region-based off-target activity with lentivirus-mediated RNAi.

Klinghoffer RA, Magnus J, Schelter J, Mehaffey M, Coleman C, Cleary MA.

RNA. 2010 May;16(5):879-84. doi: 10.1261/rna.1977810. Epub 2010 Mar 26.

6.

Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis.

Sudbery I, Enright AJ, Fraser AG, Dunham I.

BMC Genomics. 2010 Mar 15;11:175. doi: 10.1186/1471-2164-11-175.

7.

Specific inhibition of diverse pathogens in human cells by synthetic microRNA-like oligonucleotides inferred from RNAi screens.

Franceschini A, Meier R, Casanova A, Kreibich S, Daga N, Andritschke D, Dilling S, Rämö P, Emmenlauer M, Kaufmann A, Conde-Álvarez R, Low SH, Pelkmans L, Helenius A, Hardt WD, Dehio C, von Mering C.

Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4548-53. doi: 10.1073/pnas.1402353111. Epub 2014 Mar 10.

8.

A quick and efficient approach for gene silencing by using triple putative microRNA-based short hairpin RNAs.

Shan ZX, Lin QX, Yang M, Deng CY, Kuang SJ, Zhou ZL, Xiao DZ, Liu XY, Lin SG, Yu XY.

Mol Cell Biochem. 2009 Mar;323(1-2):81-9. doi: 10.1007/s11010-008-9966-3. Epub 2008 Nov 27.

PMID:
19037714
9.

Matter arising: off-targets and genome-scale RNAi screens in Drosophila.

Perrimon N, Mathey-Prevot B.

Fly (Austin). 2007 Jan-Feb;1(1):1-5.

10.

Off-target effects associated with long dsRNAs in Drosophila RNAi screens.

Moffat J, Reiling JH, Sabatini DM.

Trends Pharmacol Sci. 2007 Apr;28(4):149-51. Epub 2007 Mar 9.

PMID:
17350110
11.

FlyPrimerBank: an online database for Drosophila melanogaster gene expression analysis and knockdown evaluation of RNAi reagents.

Hu Y, Sopko R, Foos M, Kelley C, Flockhart I, Ammeux N, Wang X, Perkins L, Perrimon N, Mohr SE.

G3 (Bethesda). 2013 Sep 4;3(9):1607-16. doi: 10.1534/g3.113.007021.

12.

Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens.

Yin Z, Zhou X, Bakal C, Li F, Sun Y, Perrimon N, Wong ST.

BMC Bioinformatics. 2008 Jun 5;9:264. doi: 10.1186/1471-2105-9-264.

13.

The FLIGHT Drosophila RNAi database: 2010 update.

Sims D, Bursteinas B, Jain E, Gao Q, Baum B, Zvelebil M.

Fly (Austin). 2010 Oct-Dec;4(4):344-8. doi: 10.4161/fly.4.4.13303. Epub 2010 Oct 1.

14.

GUItars: a GUI tool for analysis of high-throughput RNA interference screening data.

Goktug AN, Ong SS, Chen T.

PLoS One. 2012;7(11):e49386. doi: 10.1371/journal.pone.0049386. Epub 2012 Nov 20.

15.

UP-TORR: online tool for accurate and Up-to-Date annotation of RNAi Reagents.

Hu Y, Roesel C, Flockhart I, Perkins L, Perrimon N, Mohr SE.

Genetics. 2013 Sep;195(1):37-45. doi: 10.1534/genetics.113.151340. Epub 2013 Jun 21.

16.

A computational study of off-target effects of RNA interference.

Qiu S, Adema CM, Lane T.

Nucleic Acids Res. 2005 Mar 30;33(6):1834-47. Print 2005.

17.

Computational detection and suppression of sequence-specific off-target phenotypes from whole genome RNAi screens.

Zhong R, Kim J, Kim HS, Kim M, Lum L, Levine B, Xiao G, White MA, Xie Y.

Nucleic Acids Res. 2014 Jul;42(13):8214-22. doi: 10.1093/nar/gku306. Epub 2014 Jun 27.

18.

RNAi screening: new approaches, understandings, and organisms.

Mohr SE, Perrimon N.

Wiley Interdiscip Rev RNA. 2012 Mar-Apr;3(2):145-58. doi: 10.1002/wrna.110. Epub 2011 Sep 22. Review.

19.

TOPS: a versatile software tool for statistical analysis and visualization of combinatorial gene-gene and gene-drug interaction screens.

Muellner MK, Duernberger G, Ganglberger F, Kerzendorfer C, Uras IZ, Schoenegger A, Bagienski K, Colinge J, Nijman SM.

BMC Bioinformatics. 2014 Apr 8;15:98. doi: 10.1186/1471-2105-15-98.

20.

sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database.

Shah JK, Garner HR, White MA, Shames DS, Minna JD.

BMC Bioinformatics. 2007 May 31;8:178.

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