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Results: 1 to 20 of 89

1.

High-accuracy identification of incident HIV-1 infections using a sequence clustering based diversity measure.

Xia XY, Ge M, Hsi JH, He X, Ruan YH, Wang ZX, Shao YM, Pan XM.

PLoS One. 2014 Jun 12;9(6):e100081. doi: 10.1371/journal.pone.0100081. eCollection 2014.

PMID:
24925130
[PubMed - in process]
Free PMC Article
2.

A new pattern-based method for identifying recent HIV-1 infections from the viral env sequence.

Yang J, Xia X, He X, Yang S, Ruan Y, Zhao Q, Wang Z, Shao Y, Pan X.

Sci China Life Sci. 2012 Apr;55(4):328-35. doi: 10.1007/s11427-012-4312-0. Epub 2012 May 9.

PMID:
22566089
[PubMed - indexed for MEDLINE]
3.

Evaluation of sequence ambiguities of the HIV-1 pol gene as a method to identify recent HIV-1 infection in transmitted drug resistance surveys.

Andersson E, Shao W, Bontell I, Cham F, Cuong do D, Wondwossen A, Morris L, Hunt G, Sönnerborg A, Bertagnolio S, Maldarelli F, Jordan MR.

Infect Genet Evol. 2013 Aug;18:125-31. doi: 10.1016/j.meegid.2013.03.050. Epub 2013 Apr 11.

PMID:
23583545
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data.

McCloskey RM, Liang RH, Harrigan PR, Brumme ZL, Poon AF.

J Virol. 2014 Jun;88(11):6181-94. doi: 10.1128/JVI.00483-14. Epub 2014 Mar 19.

PMID:
24648453
[PubMed - indexed for MEDLINE]
Free Article
5.

Population-based interventions for reducing sexually transmitted infections, including HIV infection.

Sangani P, Rutherford G, Wilkinson D.

Cochrane Database Syst Rev. 2004;(2):CD001220. Review. Update in: Cochrane Database Syst Rev. 2011;(3):CD001220.

PMID:
15106156
[PubMed - indexed for MEDLINE]
6.

Population-based interventions for reducing sexually transmitted infections, including HIV infection.

Wilkinson D, Rutherford G.

Cochrane Database Syst Rev. 2001;(2):CD001220. Review. Update in: Cochrane Database Syst Rev. 2004;(2):CD001220.

PMID:
11405980
[PubMed - indexed for MEDLINE]
7.

One-tube real-time isothermal amplification assay to identify and distinguish human immunodeficiency virus type 1 subtypes A, B, and C and circulating recombinant forms AE and AG.

de Baar MP, Timmermans EC, Bakker M, de Rooij E, van Gemen B, Goudsmit J.

J Clin Microbiol. 2001 May;39(5):1895-902.

PMID:
11326010
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evidences for viral strain selection in late stages of HIV infection: an analysis of Vpu alleles.

Gondim MV, da Silva JX, Prosdocimi F, Leonardecz-Neto E, Franco OL, Argañaraz ER.

Protein J. 2012 Feb;31(2):184-93. doi: 10.1007/s10930-011-9389-y.

PMID:
22237729
[PubMed - indexed for MEDLINE]
9.

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection.

Shankarappa R, Margolick JB, Gange SJ, Rodrigo AG, Upchurch D, Farzadegan H, Gupta P, Rinaldo CR, Learn GH, He X, Huang XL, Mullins JI.

J Virol. 1999 Dec;73(12):10489-502.

PMID:
10559367
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection.

Rieder P, Joos B, Scherrer AU, Kuster H, Braun D, Grube C, Niederöst B, Leemann C, Gianella S, Metzner KJ, Böni J, Weber R, Günthard HF.

Clin Infect Dis. 2011 Dec;53(12):1271-9. doi: 10.1093/cid/cir725. Epub 2011 Oct 12.

PMID:
21998286
[PubMed - indexed for MEDLINE]
Free Article
11.

Evaluation of cervical mucosa in transmission bottleneck during acute HIV-1 infection using a cervical tissue-based organ culture.

Shen C, Ding M, Ratner D, Montelaro RC, Chen Y, Gupta P.

PLoS One. 2012;7(3):e32539. doi: 10.1371/journal.pone.0032539. Epub 2012 Mar 7.

PMID:
22412886
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.

Pineda-Peña AC, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, Gómez-López A, Camacho RJ, de Oliveira T, Vandamme AM.

Infect Genet Evol. 2013 Oct;19:337-48. doi: 10.1016/j.meegid.2013.04.032. Epub 2013 May 7.

PMID:
23660484
[PubMed - indexed for MEDLINE]
Free Article
13.

Identification of new, emerging HIV-1 unique recombinant forms and drug resistant viruses circulating in Cameroon.

Ragupathy V, Zhao J, Wood O, Tang S, Lee S, Nyambi P, Hewlett I.

Virol J. 2011 Apr 23;8:185. doi: 10.1186/1743-422X-8-185.

PMID:
21513545
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Molecular biological assessment methods and understanding the course of the HIV infection.

Katzenstein TL.

APMIS Suppl. 2003;(114):1-37. Review.

PMID:
14626050
[PubMed - indexed for MEDLINE]
15.

Simple estimation of incident HIV infection rates in notification cohorts based on window periods of algorithms for evaluation of line-immunoassay result patterns.

Schüpbach J, Gebhardt MD, Scherrer AU, Bisset LR, Niederhauser C, Regenass S, Yerly S, Aubert V, Suter F, Pfister S, Martinetti G, Andreutti C, Klimkait T, Brandenberger M, Günthard HF; Swiss HIV Cohort Study.

PLoS One. 2013 Aug 26;8(8):e71662. doi: 10.1371/journal.pone.0071662. eCollection 2013.

PMID:
23990968
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Restricted genetic diversity of HIV-1 subtype C envelope glycoprotein from perinatally infected Zambian infants.

Zhang H, Tully DC, Hoffmann FG, He J, Kankasa C, Wood C.

PLoS One. 2010 Feb 18;5(2):e9294. doi: 10.1371/journal.pone.0009294. Erratum in: PLoS One. 2010;5(3). doi: 10.1371/annotation/c2dd3548-93b7-480e-991a-93a728bca5fe. PLoS One. 2010;5(3). doi: 10.1371/annotation/eadee58d-56c0-4399-b007-d80cc71e3f8a.

PMID:
20174636
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Italian cancer figures, report 2012: Cancer in children and adolescents.

AIRTUM Working Group; CCM; AIEOP Working Group.

Epidemiol Prev. 2013 Jan-Feb;37(1 Suppl 1):1-225. English, Italian.

PMID:
23585445
[PubMed - indexed for MEDLINE]
18.

A comparison of two measures of HIV diversity in multi-assay algorithms for HIV incidence estimation.

Cousins MM, Konikoff J, Sabin D, Khaki L, Longosz AF, Laeyendecker O, Celum C, Buchbinder SP, Seage GR 3rd, Kirk GD, Moore RD, Mehta SH, Margolick JB, Brown J, Mayer KH, Kobin BA, Wheeler D, Justman JE, Hodder SL, Quinn TC, Brookmeyer R, Eshleman SH.

PLoS One. 2014 Jun 26;9(6):e101043. doi: 10.1371/journal.pone.0101043. eCollection 2014.

PMID:
24968135
[PubMed - in process]
Free PMC Article
19.

Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection.

Volz EM, Koopman JS, Ward MJ, Brown AL, Frost SD.

PLoS Comput Biol. 2012;8(6):e1002552. doi: 10.1371/journal.pcbi.1002552. Epub 2012 Jun 28.

PMID:
22761556
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Population-based biomedical sexually transmitted infection control interventions for reducing HIV infection.

Ng BE, Butler LM, Horvath T, Rutherford GW.

Cochrane Database Syst Rev. 2011 Mar 16;(3):CD001220. doi: 10.1002/14651858.CD001220.pub3. Review.

PMID:
21412869
[PubMed - indexed for MEDLINE]
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