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Comparative chloroplast genomes of photosynthetic orchids: insights into evolution of the Orchidaceae and development of molecular markers for phylogenetic applications.

Luo J, Hou BW, Niu ZT, Liu W, Xue QY, Ding XY.

PLoS One. 2014 Jun 9;9(6):e99016. doi: 10.1371/journal.pone.0099016. eCollection 2014.


The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids.

Jheng CF, Chen TC, Lin JY, Chen TC, Wu WL, Chang CC.

Plant Sci. 2012 Jul;190:62-73. doi: 10.1016/j.plantsci.2012.04.001. Epub 2012 Apr 7.


Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries.

Kim HT, Kim JS, Moore MJ, Neubig KM, Williams NH, Whitten WM, Kim JH.

PLoS One. 2015 Nov 11;10(11):e0142215. doi: 10.1371/journal.pone.0142215. eCollection 2015.


The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family.

Lin CS, Chen JJ, Huang YT, Chan MT, Daniell H, Chang WJ, Hsu CT, Liao DC, Wu FH, Lin SY, Liao CF, Deyholos MK, Wong GK, Albert VA, Chou ML, Chen CY, Shih MC.

Sci Rep. 2015 Mar 12;5:9040. doi: 10.1038/srep09040.


Comparative genomics of four Liliales families inferred from the complete chloroplast genome sequence of Veratrum patulum O. Loes. (Melanthiaceae).

Do HD, Kim JS, Kim JH.

Gene. 2013 Nov 10;530(2):229-35. doi: 10.1016/j.gene.2013.07.100. Epub 2013 Aug 23.


Complete sequencing of five araliaceae chloroplast genomes and the phylogenetic implications.

Li R, Ma PF, Wen J, Yi TS.

PLoS One. 2013 Oct 18;8(10):e78568. doi: 10.1371/journal.pone.0078568. eCollection 2013.


Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae.

Wu FH, Chan MT, Liao DC, Hsu CT, Lee YW, Daniell H, Duvall MR, Lin CS.

BMC Plant Biol. 2010 Apr 16;10:68. doi: 10.1186/1471-2229-10-68.


Genome size diversity in orchids: consequences and evolution.

Leitch IJ, Kahandawala I, Suda J, Hanson L, Ingrouille MJ, Chase MW, Fay MF.

Ann Bot. 2009 Aug;104(3):469-81. doi: 10.1093/aob/mcp003. Epub 2009 Jan 24. Review.


Complete chloroplast genome of Macadamia integrifolia confirms the position of the Gondwanan early-diverging eudicot family Proteaceae.

Nock CJ, Baten A, King GJ.

BMC Genomics. 2014;15 Suppl 9:S13. doi: 10.1186/1471-2164-15-S9-S13. Epub 2014 Dec 8.


Complete chloroplast genome sequence of Magnolia grandiflora and comparative analysis with related species.

Li X, Gao H, Wang Y, Song J, Henry R, Wu H, Hu Z, Yao H, Luo H, Luo K, Pan H, Chen S.

Sci China Life Sci. 2013 Feb;56(2):189-98. doi: 10.1007/s11427-012-4430-8. Epub 2013 Jan 18.


The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms.

Ma J, Yang B, Zhu W, Sun L, Tian J, Wang X.

Gene. 2013 Oct 10;528(2):120-31. doi: 10.1016/j.gene.2013.07.037. Epub 2013 Jul 27. Erratum in: Gene. 2014 Jan 1;533(1):458.


Complete chloroplast genome sequence of a major invasive species, crofton weed (Ageratina adenophora).

Nie X, Lv S, Zhang Y, Du X, Wang L, Biradar SS, Tan X, Wan F, Weining S.

PLoS One. 2012;7(5):e36869. doi: 10.1371/journal.pone.0036869. Epub 2012 May 11.


Complete chloroplast genome sequences of Praxelis (Eupatorium catarium Veldkamp), an important invasive species.

Zhang Y, Li L, Yan TL, Liu Q.

Gene. 2014 Oct 1;549(1):58-69. doi: 10.1016/j.gene.2014.07.041. Epub 2014 Jul 15.


The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis.

Yao X, Tang P, Li Z, Li D, Liu Y, Huang H.

PLoS One. 2015 Jun 5;10(6):e0129347. doi: 10.1371/journal.pone.0129347. eCollection 2015.


Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes.

Gao L, Yi X, Yang YX, Su YJ, Wang T.

BMC Evol Biol. 2009 Jun 11;9:130. doi: 10.1186/1471-2148-9-130.


The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza.

Qian J, Song J, Gao H, Zhu Y, Xu J, Pang X, Yao H, Sun C, Li X, Li C, Liu J, Xu H, Chen S.

PLoS One. 2013;8(2):e57607. doi: 10.1371/journal.pone.0057607. Epub 2013 Feb 27.


Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome.

Jo YD, Park J, Kim J, Song W, Hur CG, Lee YH, Kang BC.

Plant Cell Rep. 2011 Feb;30(2):217-29. doi: 10.1007/s00299-010-0929-2. Epub 2010 Oct 27.

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