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Results: 1 to 20 of 102

1.

Transcriptome profiling of prostate tumor and matched normal samples by RNA-Seq.

Zhai W, Yao XD, Xu YF, Peng B, Zhang HM, Liu M, Huang JH, Wang GC, Zheng JH.

Eur Rev Med Pharmacol Sci. 2014;18(9):1354-60.

PMID:
24867513
[PubMed - in process]
Free Article
2.

Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays.

Srinivasan S, Patil AH, Verma M, Bingham JL, Srivatsan R.

J Clin Bioinforma. 2012 Nov 26;2(1):21. doi: 10.1186/2043-9113-2-21.

PMID:
23181285
[PubMed]
Free PMC Article
3.

Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq.

Beane J, Vick J, Schembri F, Anderlind C, Gower A, Campbell J, Luo L, Zhang XH, Xiao J, Alekseyev YO, Wang S, Levy S, Massion PP, Lenburg M, Spira A.

Cancer Prev Res (Phila). 2011 Jun;4(6):803-17. doi: 10.1158/1940-6207.CAPR-11-0212.

PMID:
21636547
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Gene expression, single nucleotide variant and fusion transcript discovery in archival material from breast tumors.

Norton N, Sun Z, Asmann YW, Serie DJ, Necela BM, Bhagwate A, Jen J, Eckloff BW, Kalari KR, Thompson KJ, Carr JM, Kachergus JM, Geiger XJ, Perez EA, Thompson EA.

PLoS One. 2013 Nov 22;8(11):e81925. doi: 10.1371/journal.pone.0081925. eCollection 2013.

PMID:
24278466
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro.

Nalpas NC, Park SD, Magee DA, Taraktsoglou M, Browne JA, Conlon KM, Rue-Albrecht K, Killick KE, Hokamp K, Lohan AJ, Loftus BJ, Gormley E, Gordon SV, MacHugh DE.

BMC Genomics. 2013 Apr 8;14:230. doi: 10.1186/1471-2164-14-230.

PMID:
23565803
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Long intergenic non-coding RNAs (LincRNAs) identified by RNA-seq in breast cancer.

Ding X, Zhu L, Ji T, Zhang X, Wang F, Gan S, Zhao M, Yang H.

PLoS One. 2014 Aug 1;9(8):e103270. doi: 10.1371/journal.pone.0103270. eCollection 2014.

PMID:
25084155
[PubMed - in process]
Free PMC Article
7.

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens.

Wang Y, Ghaffari N, Johnson CD, Braga-Neto UM, Wang H, Chen R, Zhou H.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S5. doi: 10.1186/1471-2105-12-S10-S5.

PMID:
22165852
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparative transcriptome analysis of epithelial and fiber cells in newborn mouse lenses with RNA sequencing.

Hoang TV, Kumar PK, Sutharzan S, Tsonis PA, Liang C, Robinson ML.

Mol Vis. 2014 Nov 4;20:1491-517. eCollection 2014.

PMID:
25489224
[PubMed - in process]
Free PMC Article
9.

Genome-Wide Gene Expression Profiling of Nucleus Accumbens Neurons Projecting to Ventral Pallidum Using both Microarray and Transcriptome Sequencing.

Chen H, Liu Z, Gong S, Wu X, Taylor WL, Williams RW, Matta SG, Sharp BM.

Front Neurosci. 2011 Aug 12;5:98. doi: 10.3389/fnins.2011.00098. eCollection 2011.

PMID:
21886604
[PubMed]
Free PMC Article
10.

Whole transcriptome sequencing identifies tumor-specific mutations in human oral squamous cell carcinoma.

Zhang Q, Zhang J, Jin H, Sheng S.

BMC Med Genomics. 2013 Sep 4;6:28. doi: 10.1186/1755-8794-6-28.

PMID:
24007313
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Billerey C, Boussaha M, Esquerré D, Rebours E, Djari A, Meersseman C, Klopp C, Gautheret D, Rocha D.

BMC Genomics. 2014 Jun 19;15:499. doi: 10.1186/1471-2164-15-499.

PMID:
24948191
[PubMed - in process]
Free PMC Article
12.

A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.

Raghavachari N, Barb J, Yang Y, Liu P, Woodhouse K, Levy D, O'Donnell CJ, Munson PJ, Kato GJ.

BMC Med Genomics. 2012 Jun 29;5:28. doi: 10.1186/1755-8794-5-28.

PMID:
22747986
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Both genes and lncRNAs can be used as biomarkers of prostate cancer by using high throughput sequencing data.

Cheng WS, Tao H, Hu EP, Liu S, Cai HR, Tao XL, Zhang L, Mao JJ, Yan DL.

Eur Rev Med Pharmacol Sci. 2014 Nov;18(22):3504-10.

PMID:
25491628
[PubMed - in process]
Free Article
14.

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq.

Esteve-Codina A, Kofler R, Palmieri N, Bussotti G, Notredame C, Pérez-Enciso M.

BMC Genomics. 2011 Nov 8;12:552. doi: 10.1186/1471-2164-12-552.

PMID:
22067327
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Strand-Specific RNA-Seq Provides Greater Resolution of Transcriptome Profiling.

Mills JD, Kawahara Y, Janitz M.

Curr Genomics. 2013 May;14(3):173-81. doi: 10.2174/1389202911314030003.

PMID:
24179440
[PubMed]
Free PMC Article
16.

Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases.

Liu Y, Ferguson JF, Xue C, Ballantyne RL, Silverman IM, Gosai SJ, Serfecz J, Morley MP, Gregory BD, Li M, Reilly MP.

Arterioscler Thromb Vasc Biol. 2014 Apr;34(4):902-12. doi: 10.1161/ATVBAHA.113.303123. Epub 2014 Feb 6.

PMID:
24504737
[PubMed - indexed for MEDLINE]
17.

Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells.

Zhao S, Fung-Leung WP, Bittner A, Ngo K, Liu X.

PLoS One. 2014 Jan 16;9(1):e78644. doi: 10.1371/journal.pone.0078644. eCollection 2014.

PMID:
24454679
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol.

Sun Z, Asmann YW, Nair A, Zhang Y, Wang L, Kalari KR, Bhagwate AV, Baker TR, Carr JM, Kocher JP, Perez EA, Thompson EA.

PLoS One. 2013 Aug 19;8(8):e71745. doi: 10.1371/journal.pone.0071745. eCollection 2013.

PMID:
23977132
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Differentiating progressive from nonprogressive T1 bladder cancer by gene expression profiling: applying RNA-sequencing analysis on archived specimens.

Sharron Lin X, Hu L, Sandy K, Correll M, Quackenbush J, Wu CL, Scott McDougal W.

Urol Oncol. 2014 Apr;32(3):327-36. doi: 10.1016/j.urolonc.2013.06.014. Epub 2013 Sep 18.

PMID:
24055427
[PubMed - indexed for MEDLINE]
20.

Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.

Nacu S, Yuan W, Kan Z, Bhatt D, Rivers CS, Stinson J, Peters BA, Modrusan Z, Jung K, Seshagiri S, Wu TD.

BMC Med Genomics. 2011 Jan 24;4:11. doi: 10.1186/1755-8794-4-11.

PMID:
21261984
[PubMed - indexed for MEDLINE]
Free PMC Article

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