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Polyploidy and small RNA regulation of cotton fiber development.

Guan X, Song Q, Chen ZJ.

Trends Plant Sci. 2014 Aug;19(8):516-28. doi: 10.1016/j.tplants.2014.04.007. Epub 2014 May 25. Review.


Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant.

Hovav R, Udall JA, Chaudhary B, Rapp R, Flagel L, Wendel JF.

Proc Natl Acad Sci U S A. 2008 Apr 22;105(16):6191-5. doi: 10.1073/pnas.0711569105. Epub 2008 Apr 17.


Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.).

Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ.

Genome Biol. 2009;10(11):R122. doi: 10.1186/gb-2009-10-11-r122. Epub 2009 Nov 4.


Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton.

Samuel Yang S, Cheung F, Lee JJ, Ha M, Wei NE, Sze SH, Stelly DM, Thaxton P, Triplett B, Town CD, Jeffrey Chen Z.

Plant J. 2006 Sep;47(5):761-75. Epub 2006 Aug 2.


Enrichment of a set of microRNAs during the cotton fiber development.

Kwak PB, Wang QQ, Chen XS, Qiu CX, Yang ZM.

BMC Genomics. 2009 Sep 29;10:457. doi: 10.1186/1471-2164-10-457.


Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense.

Hu G, Koh J, Yoo MJ, Grupp K, Chen S, Wendel JF.

New Phytol. 2013 Oct;200(2):570-82. doi: 10.1111/nph.12381. Epub 2013 Jun 25.


miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development.

Guan X, Pang M, Nah G, Shi X, Ye W, Stelly DM, Chen ZJ.

Nat Commun. 2014;5:3050. doi: 10.1038/ncomms4050.


Analysis of xyloglucan endotransglycosylase/hydrolase (XTH) genes from allotetraploid (Gossypium hirsutum) cotton and its diploid progenitors expressed during fiber elongation.

Michailidis G, Argiriou A, Darzentas N, Tsaftaris A.

J Plant Physiol. 2009 Mar 1;166(4):403-16. doi: 10.1016/j.jplph.2008.06.013. Epub 2008 Sep 11.


Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium).

Chaudhary B, Hovav R, Flagel L, Mittler R, Wendel JF.

BMC Genomics. 2009 Aug 17;10:378. doi: 10.1186/1471-2164-10-378.


Genetic mapping and QTL analysis of fiber-related traits in cotton ( Gossypium).

Mei M, Syed NH, Gao W, Thaxton PM, Smith CW, Stelly DM, Chen ZJ.

Theor Appl Genet. 2004 Jan;108(2):280-91. Epub 2003 Sep 25.


Functional analysis of the seed coat-specific gene GbMYB2 from cotton.

Huang Y, Liu X, Tang K, Zuo K.

Plant Physiol Biochem. 2013 Dec;73:16-22. doi: 10.1016/j.plaphy.2013.08.004. Epub 2013 Aug 20.


Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton.

Hovav R, Chaudhary B, Udall JA, Flagel L, Wendel JF.

Genetics. 2008 Jul;179(3):1725-33. doi: 10.1534/genetics.108.089656. Epub 2008 Jun 18.


The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.).

Naoumkina M, Thyssen G, Fang DD, Hinchliffe DJ, Florane C, Yeater KM, Page JT, Udall JA.

PLoS One. 2014 Mar 5;9(3):e90830. doi: 10.1371/journal.pone.0090830. eCollection 2014.


Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton.

Flagel LE, Wendel JF, Udall JA.

BMC Genomics. 2012 Jul 6;13:302. doi: 10.1186/1471-2164-13-302.


Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.).

Wang M, Yuan D, Tu L, Gao W, He Y, Hu H, Wang P, Liu N, Lindsey K, Zhang X.

New Phytol. 2015 Sep;207(4):1181-97. doi: 10.1111/nph.13429. Epub 2015 Apr 28.


Polyploidy and the petal transcriptome of Gossypium.

Rambani A, Page JT, Udall JA.

BMC Plant Biol. 2014 Jan 6;14:3. doi: 10.1186/1471-2229-14-3.


Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells.

Xue W, Wang Z, Du M, Liu Y, Liu JY.

BMC Genomics. 2013 Sep 17;14:629. doi: 10.1186/1471-2164-14-629.


Polyploidization altered gene functions in cotton (Gossypium spp.).

Xu Z, Yu JZ, Cho J, Yu J, Kohel RJ, Percy RG.

PLoS One. 2010 Dec 16;5(12):e14351. doi: 10.1371/journal.pone.0014351.


The MYB transcription factor GhMYB25 regulates early fibre and trichome development.

Machado A, Wu Y, Yang Y, Llewellyn DJ, Dennis ES.

Plant J. 2009 Jul;59(1):52-62. doi: 10.1111/j.1365-313X.2009.03847.x. Epub 2009 Feb 26. Erratum in: Plant J. 2009 Dec;60(5):929.


The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism.

Hovav R, Udall JA, Chaudhary B, Hovav E, Flagel L, Hu G, Wendel JF.

PLoS Genet. 2008 Feb;4(2):e25. doi: 10.1371/journal.pgen.0040025.

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