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Related Citations for PubMed (Select 24862329)


Bioinformatic analysis of HIV-1 entry and pathogenesis.

Aiamkitsumrit B, Dampier W, Antell G, Rivera N, Martin-Garcia J, Pirrone V, Nonnemacher MR, Wigdahl B.

Curr HIV Res. 2014;12(2):132-61. Review.


Defining differential genetic signatures in CXCR4- and the CCR5-utilizing HIV-1 co-linear sequences.

Aiamkitsumrit B, Dampier W, Martin-Garcia J, Nonnemacher MR, Pirrone V, Ivanova T, Zhong W, Kilareski E, Aldigun H, Frantz B, Rimbey M, Wojno A, Passic S, Williams JW, Shah S, Blakey B, Parikh N, Jacobson JM, Moldover B, Wigdahl B.

PLoS One. 2014 Sep 29;9(9):e107389. doi: 10.1371/journal.pone.0107389. eCollection 2014.


Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences.

Jensen MA, Li FS, van 't Wout AB, Nickle DC, Shriner D, He HX, McLaughlin S, Shankarappa R, Margolick JB, Mullins JI.

J Virol. 2003 Dec;77(24):13376-88.


Differences in molecular evolution between switch (R5 to R5X4/X4-tropic) and non-switch (R5-tropic only) HIV-1 populations during infection.

Mild M, Kvist A, Esbjörnsson J, Karlsson I, Fenyö EM, Medstrand P.

Infect Genet Evol. 2010 Apr;10(3):356-64. doi: 10.1016/j.meegid.2009.05.003. Epub 2009 May 14.


Linkages between HIV-1 specificity for CCR5 or CXCR4 and in vitro usage of alternative coreceptors during progressive HIV-1 subtype C infection.

Cashin K, Jakobsen MR, Sterjovski J, Roche M, Ellett A, Flynn JK, Borm K, Gouillou M, Churchill MJ, Gorry PR.

Retrovirology. 2013 Sep 16;10:98. doi: 10.1186/1742-4690-10-98.


Position 22 of the V3 loop is associated with co-receptor usage and disease progression in HIV-1 subtype B isolates.

Zhou HZ, Xu HF, Xin XM, Guan XR, Zhou J.

Curr HIV Res. 2011 Dec 1;9(8):636-41.


Hybrid approach for predicting coreceptor used by HIV-1 from its V3 loop amino acid sequence.

Kumar R, Raghava GP.

PLoS One. 2013 Apr 15;8(4):e61437. doi: 10.1371/journal.pone.0061437. Print 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/5c57dcdc-e5d9-4999-a7d0-32004427cba5.


Coreceptor tropism in human immunodeficiency virus type 1 subtype D: high prevalence of CXCR4 tropism and heterogeneous composition of viral populations.

Huang W, Eshleman SH, Toma J, Fransen S, Stawiski E, Paxinos EE, Whitcomb JM, Young AM, Donnell D, Mmiro F, Musoke P, Guay LA, Jackson JB, Parkin NT, Petropoulos CJ.

J Virol. 2007 Aug;81(15):7885-93. Epub 2007 May 16.


R5X4 viruses are evolutionary, functional, and antigenic intermediates in the pathway of a simian-human immunodeficiency virus coreceptor switch.

Tasca S, Ho SH, Cheng-Mayer C.

J Virol. 2008 Jul;82(14):7089-99. doi: 10.1128/JVI.00570-08. Epub 2008 May 14.


Complex determinants in human immunodeficiency virus type 1 envelope gp120 mediate CXCR4-dependent infection of macrophages.

Ghaffari G, Tuttle DL, Briggs D, Burkhardt BR, Bhatt D, Andiman WA, Sleasman JW, Goodenow MM.

J Virol. 2005 Nov;79(21):13250-61.


HIV-1 chemokine coreceptor utilization in paired cerebrospinal fluid and plasma samples: a survey of subjects with viremia.

Spudich SS, Huang W, Nilsson AC, Petropoulos CJ, Liegler TJ, Whitcomb JM, Price RW.

J Infect Dis. 2005 Mar 15;191(6):890-8. Epub 2005 Feb 9.


Inhibition of dual/mixed tropic HIV-1 isolates by CCR5-inhibitors in primary lymphocytes and macrophages.

Surdo M, Balestra E, Saccomandi P, Di Santo F, Montano M, Di Carlo D, Sarmati L, Aquaro S, Andreoni M, Svicher V, Perno CF, Ceccherini-Silberstein F.

PLoS One. 2013 Jul 9;8(7):e68076. doi: 10.1371/journal.pone.0068076. Print 2013.


Selected amino acid mutations in HIV-1 B subtype gp41 are associated with specific gp120v₃ signatures in the regulation of co-receptor usage.

Dimonte S, Mercurio F, Svicher V, D'Arrigo R, Perno CF, Ceccherini-Silberstein F.

Retrovirology. 2011 May 12;8:33. doi: 10.1186/1742-4690-8-33.


Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage.

Masso M, Vaisman II.

BMC Bioinformatics. 2010 Oct 5;11:494. doi: 10.1186/1471-2105-11-494.


HIV-1 dual/mixed tropic isolates show different genetic and phenotypic characteristics and response to maraviroc in vitro.

Svicher V, Balestra E, Cento V, Sarmati L, Dori L, Vandenbroucke I, D'Arrigo R, Buonomini AR, Van Marck H, Surdo M, Saccomandi P, Mostmans W, Aerssens J, Aquaro S, Stuyver LJ, Andreoni M, Ceccherini-Silberstein F, Perno CF.

Antiviral Res. 2011 Apr;90(1):42-53. doi: 10.1016/j.antiviral.2011.02.005. Epub 2011 Feb 22.


X4-Tropic Human Immunodeficiency Virus (HIV), IIIB Utilizes CXCR4 As Coreceptor Distinctly From R5 × 4-Tropic Viruses.

Islam S, Hoque SA, Adnan N, Tanaka A, Jinno-Oue A, Hoshino H.

Microbiol Immunol. 2013 Apr 8. doi: 10.1111/j.1348-0421.12051. [Epub ahead of print]

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