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Similar articles for PubMed (Select 24860159)

1.

GenomeVISTA--an integrated software package for whole-genome alignment and visualization.

Poliakov A, Foong J, Brudno M, Dubchak I.

Bioinformatics. 2014 Sep 15;30(18):2654-5. doi: 10.1093/bioinformatics/btu355. Epub 2014 May 23.

PMID:
24860159
2.
3.

Multiple whole genome alignments and novel biomedical applications at the VISTA portal.

Brudno M, Poliakov A, Minovitsky S, Ratnere I, Dubchak I.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W669-74. Epub 2007 May 8.

4.

VISTA: computational tools for comparative genomics.

Frazer KA, Pachter L, Poliakov A, Rubin EM, Dubchak I.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W273-9.

5.

Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.

Shah N, Couronne O, Pennacchio LA, Brudno M, Batzoglou S, Bethel EW, Rubin EM, Hamann B, Dubchak I.

Bioinformatics. 2004 Mar 22;20(5):636-43. Epub 2004 Jan 22.

6.

Multiple whole-genome alignments without a reference organism.

Dubchak I, Poliakov A, Kislyuk A, Brudno M.

Genome Res. 2009 Apr;19(4):682-9. doi: 10.1101/gr.081778.108. Epub 2009 Jan 28.

7.

Combo: a whole genome comparative browser.

Engels R, Yu T, Burge C, Mesirov JP, DeCaprio D, Galagan JE.

Bioinformatics. 2006 Jul 15;22(14):1782-3. Epub 2006 May 18.

8.

Making whole genome multiple alignments usable for biologists.

Blankenberg D, Taylor J, Nekrutenko A; Galaxy Team.

Bioinformatics. 2011 Sep 1;27(17):2426-8. doi: 10.1093/bioinformatics/btr398. Epub 2011 Jul 19.

10.

EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae.

Florea L, McClelland M, Riemer C, Schwartz S, Miller W.

Nucleic Acids Res. 2003 Jul 1;31(13):3527-32.

11.

COMPAM :visualization of combining pairwise alignments for multiple genomes.

Lee D, Choi JH, Dalkilic MM, Kim S.

Bioinformatics. 2006 Jan 15;22(2):242-4. Epub 2005 Nov 3.

12.

Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC.

Pöhler D, Werner N, Steinkamp R, Morgenstern B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W532-4.

13.

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.

14.

SNP-VISTA: an interactive SNP visualization tool.

Shah N, Teplitsky MV, Minovitsky S, Pennacchio LA, Hugenholtz P, Hamann B, Dubchak IL.

BMC Bioinformatics. 2005 Dec 8;6:292.

15.

GenomeView: a next-generation genome browser.

Abeel T, Van Parys T, Saeys Y, Galagan J, Van de Peer Y.

Nucleic Acids Res. 2012 Jan;40(2):e12. doi: 10.1093/nar/gkr995. Epub 2011 Nov 18.

16.

Obtaining comparative genomic data with the VISTA family of computational tools.

Ratnere I, Dubchak I.

Curr Protoc Bioinformatics. 2009 Jun;Chapter 10:Unit 10.6. doi: 10.1002/0471250953.bi1006s26.

PMID:
19496056
17.

G-InforBIO: integrated system for microbial genomics.

Tanaka N, Abe T, Miyazaki S, Sugawara H.

BMC Bioinformatics. 2006 Aug 4;7:368.

18.

Genome visualization made fast and simple.

Gibson R, Smith DR.

Bioinformatics. 2003 Jul 22;19(11):1449-50.

19.

circlize Implements and enhances circular visualization in R.

Gu Z, Gu L, Eils R, Schlesner M, Brors B.

Bioinformatics. 2014 Oct;30(19):2811-2. doi: 10.1093/bioinformatics/btu393. Epub 2014 Jun 14.

PMID:
24930139
20.

ABC: software for interactive browsing of genomic multiple sequence alignment data.

Cooper GM, Singaravelu SA, Sidow A.

BMC Bioinformatics. 2004 Dec 8;5:192.

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