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Similar articles for PubMed (Select 24803864)

1.

Variational Implicit Solvation with Poisson-Boltzmann Theory.

Zhou S, Cheng LT, Dzubiella J, Li B, McCammon JA.

J Chem Theory Comput. 2014 Apr 8;10(4):1454-1467. Epub 2014 Feb 21.

2.

LS-VISM: A software package for analysis of biomolecular solvation.

Zhou S, Cheng LT, Sun H, Che J, Dzubiella J, Li B, McCammon JA.

J Comput Chem. 2015 May 30;36(14):1047-59. doi: 10.1002/jcc.23890. Epub 2015 Mar 12.

PMID:
25766844
3.

Variational Implicit-Solvent Modeling of Host-Guest Binding: A Case Study on Cucurbit[7]uril|

Zhou S, Rogers KE, de Oliveira CA, Baron R, Cheng LT, Dzubiella J, Li B, McCammon JA.

J Chem Theory Comput. 2013 Sep 10;9(9):4195-4204. Epub 2013 Aug 1.

4.

Evaluation of Hydration Free Energy by Level-Set Variational Implicit-Solvent Model with Coulomb-Field Approximation.

Guo Z, Li B, Dzubiella J, Cheng LT, McCammon JA, Che J.

J Chem Theory Comput. 2013 Mar 12;9(3):1778-1787. Epub 2013 Jan 29.

5.

Level-Set Variational Implicit-Solvent Modeling of Biomolecules with the Coulomb-Field Approximation.

Wang Z, Che J, Cheng LT, Dzubiella J, Li B, McCammon JA.

J Chem Theory Comput. 2012 Feb 14;8(2):386-397. Epub 2011 Dec 19.

6.

A new set of atomic radii for accurate estimation of solvation free energy by Poisson-Boltzmann solvent model.

Yamagishi J, Okimoto N, Morimoto G, Taiji M.

J Comput Chem. 2014 Nov 5;35(29):2132-9. doi: 10.1002/jcc.23728. Epub 2014 Sep 15.

8.
9.
10.

Explicit and implicit modeling of nanobubbles in hydrophobic confinement.

Dzubiella J.

An Acad Bras Cienc. 2010 Mar;82(1):3-12.

11.

Differential geometry based solvation model II: Lagrangian formulation.

Chen Z, Baker NA, Wei GW.

J Math Biol. 2011 Dec;63(6):1139-200. doi: 10.1007/s00285-011-0402-z. Epub 2011 Jan 30.

12.

Phase-field approach to implicit solvation of biomolecules with Coulomb-field approximation.

Zhao Y, Kwan YY, Che J, Li B, McCammon JA.

J Chem Phys. 2013 Jul 14;139(2):024111. doi: 10.1063/1.4812839.

13.
14.

Differential geometry based solvation model. III. Quantum formulation.

Chen Z, Wei GW.

J Chem Phys. 2011 Nov 21;135(19):194108. doi: 10.1063/1.3660212.

15.

Force-field and quantum-mechanical binding study of selected SAMPL3 host-guest complexes.

Hamaguchi N, Fusti-Molnar L, Wlodek S.

J Comput Aided Mol Des. 2012 May;26(5):577-82. doi: 10.1007/s10822-012-9553-2. Epub 2012 Feb 25.

PMID:
22366954
16.

Electrostatic free energy and its variations in implicit solvent models.

Che J, Dzubiella J, Li B, McCammon JA.

J Phys Chem B. 2008 Mar 13;112(10):3058-69. doi: 10.1021/jp7101012. Epub 2008 Feb 15.

PMID:
18275182
17.

Quantum dynamics in continuum for proton transport II: Variational solvent-solute interface.

Chen D, Chen Z, Wei GW.

Int J Numer Method Biomed Eng. 2012 Jan;28(1):25-51. doi: 10.1002/cnm.1458. Epub 2011 Aug 9.

18.

An implicit solvent model for SCC-DFTB with Charge-Dependent Radii.

Hou G, Zhu X, Cui Q.

J Chem Theory Comput. 2010 Aug 10;6(8):2303-2314.

19.

Interfaces and hydrophobic interactions in receptor-ligand systems: A level-set variational implicit solvent approach.

Cheng LT, Wang Z, Setny P, Dzubiella J, Li B, McCammon JA.

J Chem Phys. 2009 Oct 14;131(14):144102. doi: 10.1063/1.3242274.

20.

Highly accurate biomolecular electrostatics in continuum dielectric environments.

Zhou YC, Feig M, Wei GW.

J Comput Chem. 2008 Jan 15;29(1):87-97.

PMID:
17508411
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