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Results: 1 to 20 of 113

1.

Syntrophic exchange in synthetic microbial communities.

Mee MT, Collins JJ, Church GM, Wang HH.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):E2149-56. doi: 10.1073/pnas.1405641111. Epub 2014 Apr 28.

PMID:
24778240
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Microbial diversity and interactions in subgingival biofilm communities.

Diaz PI.

Front Oral Biol. 2012;15:17-40. doi: 10.1159/000329669. Epub 2011 Nov 11. Review.

PMID:
22142955
[PubMed - indexed for MEDLINE]
3.

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria.

Pande S, Merker H, Bohl K, Reichelt M, Schuster S, de Figueiredo LF, Kaleta C, Kost C.

ISME J. 2014 May;8(5):953-62. doi: 10.1038/ismej.2013.211. Epub 2013 Nov 28.

PMID:
24285359
[PubMed - indexed for MEDLINE]
4.

Environments that induce synthetic microbial ecosystems.

Klitgord N, Segrè D.

PLoS Comput Biol. 2010 Nov 18;6(11):e1001002. doi: 10.1371/journal.pcbi.1001002.

PMID:
21124952
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Proteogenomic approaches for the molecular characterization of natural microbial communities.

Banfield JF, Verberkmoes NC, Hettich RL, Thelen MP.

OMICS. 2005 Winter;9(4):301-33.

PMID:
16402891
[PubMed - indexed for MEDLINE]
6.

Peptide-based communication system enables Escherichia coli to Bacillus megaterium interspecies signaling.

Marchand N, Collins CH.

Biotechnol Bioeng. 2013 Nov;110(11):3003-12. doi: 10.1002/bit.24975. Epub 2013 Jul 5.

PMID:
23775238
[PubMed - indexed for MEDLINE]
7.

Eco-evolutionary feedbacks drive species interactions.

Andrade-Domínguez A, Salazar E, Vargas-Lagunas Mdel C, Kolter R, Encarnación S.

ISME J. 2014 May;8(5):1041-54. doi: 10.1038/ismej.2013.208. Epub 2013 Dec 5.

PMID:
24304674
[PubMed - indexed for MEDLINE]
8.

Ecosystems biology of microbial metabolism.

Klitgord N, Segrè D.

Curr Opin Biotechnol. 2011 Aug;22(4):541-6. doi: 10.1016/j.copbio.2011.04.018. Epub 2011 May 16. Review.

PMID:
21592777
[PubMed - indexed for MEDLINE]
9.

Evolution of resource cycling in ecosystems and individuals.

Crombach A, Hogeweg P.

BMC Evol Biol. 2009 Jun 1;9:122. doi: 10.1186/1471-2148-9-122.

PMID:
19486519
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2.

Zhou J, Deng Y, Luo F, He Z, Yang Y.

MBio. 2011 Jul 26;2(4). pii: e00122-11. doi: 10.1128/mBio.00122-11. Print 2011.

PMID:
21791581
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.

Denef VJ, Mueller RS, Banfield JF.

ISME J. 2010 May;4(5):599-610. doi: 10.1038/ismej.2009.158. Epub 2010 Feb 18.

PMID:
20164865
[PubMed - indexed for MEDLINE]
12.

The maturing of microbial ecology.

Schmidt TM.

Int Microbiol. 2006 Sep;9(3):217-23. Review.

PMID:
17061212
[PubMed - indexed for MEDLINE]
Free Article
13.

Intertwined interspecies relationships: approaches to untangle the microbial network.

Haruta S, Kato S, Yamamoto K, Igarashi Y.

Environ Microbiol. 2009 Dec;11(12):2963-9. doi: 10.1111/j.1462-2920.2009.01956.x. Epub 2009 Jun 7. Review.

PMID:
19508345
[PubMed - indexed for MEDLINE]
14.

Stochastic simulations of a synthetic bacteria-yeast ecosystem.

Biliouris K, Babson D, Schmidt-Dannert C, Kaznessis YN.

BMC Syst Biol. 2012 Jun 6;6:58. doi: 10.1186/1752-0509-6-58.

PMID:
22672814
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities.

Tzamali E, Poirazi P, Tollis IG, Reczko M.

BMC Syst Biol. 2011 Oct 18;5:167. doi: 10.1186/1752-0509-5-167.

PMID:
22008379
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Modeling microbial communities: current, developing, and future technologies for predicting microbial community interaction.

Larsen P, Hamada Y, Gilbert J.

J Biotechnol. 2012 Jul 31;160(1-2):17-24. doi: 10.1016/j.jbiotec.2012.03.009. Epub 2012 Mar 23. Review.

PMID:
22465599
[PubMed - indexed for MEDLINE]
17.

OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities.

Zomorrodi AR, Maranas CD.

PLoS Comput Biol. 2012 Feb;8(2):e1002363. doi: 10.1371/journal.pcbi.1002363. Epub 2012 Feb 2.

PMID:
22319433
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Systems biology: Functional analysis of natural microbial consortia using community proteomics.

VerBerkmoes NC, Denef VJ, Hettich RL, Banfield JF.

Nat Rev Microbiol. 2009 Mar;7(3):196-205. doi: 10.1038/nrmicro2080. Review.

PMID:
19219053
[PubMed - indexed for MEDLINE]
19.

Characterizing mixed microbial population dynamics using time-series analysis.

Trosvik P, Rudi K, Naes T, Kohler A, Chan KS, Jakobsen KS, Stenseth NC.

ISME J. 2008 Jul;2(7):707-15. doi: 10.1038/ismej.2008.36. Epub 2008 Apr 3.

PMID:
18385770
[PubMed - indexed for MEDLINE]
20.

Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass.

Minty JJ, Singer ME, Scholz SA, Bae CH, Ahn JH, Foster CE, Liao JC, Lin XN.

Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14592-7. doi: 10.1073/pnas.1218447110. Epub 2013 Aug 19.

PMID:
23959872
[PubMed - indexed for MEDLINE]
Free PMC Article

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