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Results: 1 to 20 of 100

1.

OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals.

Douzery EJ, Scornavacca C, Romiguier J, Belkhir K, Galtier N, Delsuc F, Ranwez V.

Mol Biol Evol. 2014 Jul;31(7):1923-8. doi: 10.1093/molbev/msu132. Epub 2014 Apr 9.

PMID:
24723423
[PubMed - in process]
2.

OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics.

Ranwez V, Delsuc F, Ranwez S, Belkhir K, Tilak MK, Douzery EJ.

BMC Evol Biol. 2007 Nov 30;7:241.

PMID:
18053139
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.

Schreiber F, Pick K, Erpenbeck D, Wörheide G, Morgenstern B.

BMC Bioinformatics. 2009 Jul 16;10:219. doi: 10.1186/1471-2105-10-219.

PMID:
19607672
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences.

Schreiber F, Wörheide G, Morgenstern B.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W185-8. doi: 10.1093/nar/gkp434. Epub 2009 Jun 2.

PMID:
19491309
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

GeneTrees: a phylogenomics resource for prokaryotes.

Tian Y, Dickerman AW.

Nucleic Acids Res. 2007 Jan;35(Database issue):D328-31. Epub 2006 Dec 6.

PMID:
17151073
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels.

Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW.

BMC Evol Biol. 2010 Feb 24;10:61. doi: 10.1186/1471-2148-10-61.

PMID:
20181251
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.

Chiapello H, Gendrault A, Caron C, Blum J, Petit MA, El Karoui M.

BMC Bioinformatics. 2008 Nov 27;9:498. doi: 10.1186/1471-2105-9-498.

PMID:
19038022
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

PhyloExplorer: a web server to validate, explore and query phylogenetic trees.

Ranwez V, Clairon N, Delsuc F, Pourali S, Auberval N, Diser S, Berry V.

BMC Evol Biol. 2009 May 18;9:108. doi: 10.1186/1471-2148-9-108.

PMID:
19450253
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Phytome: a platform for plant comparative genomics.

Hartmann S, Lu D, Phillips J, Vision TJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D724-30.

PMID:
16381967
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Databases of homologous gene families for comparative genomics.

Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S3. doi: 10.1186/1471-2105-10-S6-S3.

PMID:
19534752
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

ABC: software for interactive browsing of genomic multiple sequence alignment data.

Cooper GM, Singaravelu SA, Sidow A.

BMC Bioinformatics. 2004 Dec 8;5:192.

PMID:
15588288
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species.

Kim N, Alekseyenko AV, Roy M, Lee C.

Nucleic Acids Res. 2007 Jan;35(Database issue):D93-8. Epub 2006 Nov 15.

PMID:
17108355
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups.

Uchiyama I.

Nucleic Acids Res. 2007 Jan;35(Database issue):D343-6. Epub 2006 Nov 29.

PMID:
17135196
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

G-compass: a web-based comparative genome browser between human and other vertebrate genomes.

Kawahara Y, Sakate R, Matsuya A, Murakami K, Sato Y, Zhang H, Gojobori T, Itoh T, Imanishi T.

Bioinformatics. 2009 Dec 15;25(24):3321-2. doi: 10.1093/bioinformatics/btp594. Epub 2009 Oct 21.

PMID:
19846439
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

Biol Direct. 2007 Nov 27;2:33.

PMID:
18042280
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Assessing the performance of single-copy genes for recovering robust phylogenies.

Aguileta G, Marthey S, Chiapello H, Lebrun MH, Rodolphe F, Fournier E, Gendrault-Jacquemard A, Giraud T.

Syst Biol. 2008 Aug;57(4):613-27. doi: 10.1080/10635150802306527.

PMID:
18709599
[PubMed - indexed for MEDLINE]
17.

eggNOG: automated construction and annotation of orthologous groups of genes.

Jensen LJ, Julien P, Kuhn M, von Mering C, Muller J, Doerks T, Bork P.

Nucleic Acids Res. 2008 Jan;36(Database issue):D250-4. Epub 2007 Oct 16.

PMID:
17942413
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

e-Fungi: a data resource for comparative analysis of fungal genomes.

Hedeler C, Wong HM, Cornell MJ, Alam I, Soanes DM, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG, Paton NW.

BMC Genomics. 2007 Nov 20;8:426.

PMID:
18028535
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

PhyloPat: phylogenetic pattern analysis of eukaryotic genes.

Hulsen T, de Vlieg J, Groenen PM.

BMC Bioinformatics. 2006 Sep 1;7:398.

PMID:
16948844
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

PMID:
20429936
[PubMed - indexed for MEDLINE]
Free PMC Article

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