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Items: 1 to 20 of 99

1.

Transcriptional landscape of the prenatal human brain.

Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Ebbert A, Riley ZL, Royall JJ, Aiona K, Arnold JM, Bennet C, Bertagnolli D, Brouner K, Butler S, Caldejon S, Carey A, Cuhaciyan C, Dalley RA, Dee N, Dolbeare TA, Facer BA, Feng D, Fliss TP, Gee G, Goldy J, Gourley L, Gregor BW, Gu G, Howard RE, Jochim JM, Kuan CL, Lau C, Lee CK, Lee F, Lemon TA, Lesnar P, McMurray B, Mastan N, Mosqueda N, Naluai-Cecchini T, Ngo NK, Nyhus J, Oldre A, Olson E, Parente J, Parker PD, Parry SE, Stevens A, Pletikos M, Reding M, Roll K, Sandman D, Sarreal M, Shapouri S, Shapovalova NV, Shen EH, Sjoquist N, Slaughterbeck CR, Smith M, Sodt AJ, Williams D, Zöllei L, Fischl B, Gerstein MB, Geschwind DH, Glass IA, Hawrylycz MJ, Hevner RF, Huang H, Jones AR, Knowles JA, Levitt P, Phillips JW, Sestan N, Wohnoutka P, Dang C, Bernard A, Hohmann JG, Lein ES.

Nature. 2014 Apr 10;508(7495):199-206. doi: 10.1038/nature13185. Epub 2014 Apr 2.

2.

An anatomically comprehensive atlas of the adult human brain transcriptome.

Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, Daly BD, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant SG, Jones AR.

Nature. 2012 Sep 20;489(7416):391-9. doi: 10.1038/nature11405.

3.

A comprehensive transcriptional map of primate brain development.

Bakken TE, Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Dalley RA, Royall JJ, Lemon T, Shapouri S, Aiona K, Arnold J, Bennett JL, Bertagnolli D, Bickley K, Boe A, Brouner K, Butler S, Byrnes E, Caldejon S, Carey A, Cate S, Chapin M, Chen J, Dee N, Desta T, Dolbeare TA, Dotson N, Ebbert A, Fulfs E, Gee G, Gilbert TL, Goldy J, Gourley L, Gregor B, Gu G, Hall J, Haradon Z, Haynor DR, Hejazinia N, Hoerder-Suabedissen A, Howard R, Jochim J, Kinnunen M, Kriedberg A, Kuan CL, Lau C, Lee CK, Lee F, Luong L, Mastan N, May R, Melchor J, Mosqueda N, Mott E, Ngo K, Nyhus J, Oldre A, Olson E, Parente J, Parker PD, Parry S, Pendergraft J, Potekhina L, Reding M, Riley ZL, Roberts T, Rogers B, Roll K, Rosen D, Sandman D, Sarreal M, Shapovalova N, Shi S, Sjoquist N, Sodt AJ, Townsend R, Velasquez L, Wagley U, Wakeman WB, White C, Bennett C, Wu J, Young R, Youngstrom BL, Wohnoutka P, Gibbs RA, Rogers J, Hohmann JG, Hawrylycz MJ, Hevner RF, Molnár Z, Phillips JW, Dang C, Jones AR, Amaral DG, Bernard A, Lein ES.

Nature. 2016 Jul 13;535(7612):367-75. doi: 10.1038/nature18637.

PMID:
27409810
4.

Transcriptional profiles of supragranular-enriched genes associate with corticocortical network architecture in the human brain.

Krienen FM, Yeo BT, Ge T, Buckner RL, Sherwood CC.

Proc Natl Acad Sci U S A. 2016 Jan 26;113(4):E469-78. doi: 10.1073/pnas.1510903113. Epub 2016 Jan 6.

5.

Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal.

Fietz SA, Lachmann R, Brandl H, Kircher M, Samusik N, Schröder R, Lakshmanaperumal N, Henry I, Vogt J, Riehn A, Distler W, Nitsch R, Enard W, Pääbo S, Huttner WB.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11836-41. doi: 10.1073/pnas.1209647109. Epub 2012 Jul 2.

6.

Spatial-temporal atlas of human fetal brain development during the early second trimester.

Zhan J, Dinov ID, Li J, Zhang Z, Hobel S, Shi Y, Lin X, Zamanyan A, Feng L, Teng G, Fang F, Tang Y, Zang F, Toga AW, Liu S.

Neuroimage. 2013 Nov 15;82:115-26. doi: 10.1016/j.neuroimage.2013.05.063. Epub 2013 May 31.

7.

Spatio-temporal transcriptome of the human brain.

Kang HJ, Kawasawa YI, Cheng F, Zhu Y, Xu X, Li M, Sousa AM, Pletikos M, Meyer KA, Sedmak G, Guennel T, Shin Y, Johnson MB, Krsnik Z, Mayer S, Fertuzinhos S, Umlauf S, Lisgo SN, Vortmeyer A, Weinberger DR, Mane S, Hyde TM, Huttner A, Reimers M, Kleinman JE, Sestan N.

Nature. 2011 Oct 26;478(7370):483-9. doi: 10.1038/nature10523.

8.

Comparative analysis of the subventricular zone in rat, ferret and macaque: evidence for an outer subventricular zone in rodents.

Martínez-Cerdeño V, Cunningham CL, Camacho J, Antczak JL, Prakash AN, Cziep ME, Walker AI, Noctor SC.

PLoS One. 2012;7(1):e30178. doi: 10.1371/journal.pone.0030178. Epub 2012 Jan 17.

9.

Canonical genetic signatures of the adult human brain.

Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee CK, Bernard A, Glasser MF, Dierker DL, Menche J, Szafer A, Collman F, Grange P, Berman KA, Mihalas S, Yao Z, Stewart L, Barabási AL, Schulkin J, Phillips J, Ng L, Dang C, Haynor DR, Jones A, Van Essen DC, Koch C, Lein E.

Nat Neurosci. 2015 Dec;18(12):1832-44. doi: 10.1038/nn.4171. Epub 2015 Nov 16.

10.

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.

Sunkin SM, Ng L, Lau C, Dolbeare T, Gilbert TL, Thompson CL, Hawrylycz M, Dang C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D996-D1008. doi: 10.1093/nar/gks1042. Epub 2012 Nov 28.

11.

In vitro MRI of brain development.

Rados M, Judas M, Kostović I.

Eur J Radiol. 2006 Feb;57(2):187-98. Epub 2006 Jan 24. Review.

PMID:
16439088
12.

Developmental regulation of human cortex transcription and its clinical relevance at single base resolution.

Jaffe AE, Shin J, Collado-Torres L, Leek JT, Tao R, Li C, Gao Y, Jia Y, Maher BJ, Hyde TM, Kleinman JE, Weinberger DR.

Nat Neurosci. 2015 Jan;18(1):154-61. doi: 10.1038/nn.3898. Epub 2014 Dec 15.

13.

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain.

Seemann SE, Sunkin SM, Hawrylycz MJ, Ruzzo WL, Gorodkin J.

BMC Genomics. 2012 May 31;13:214. doi: 10.1186/1471-2164-13-214.

14.
15.

Ontogeny of the dopamine D2 receptor mRNA expressing cells in the human hippocampal formation and temporal neocortex.

Gurevich EV, Kordower JH, Joyce JN.

J Chem Neuroanat. 2000 Dec;20(3-4):307-25.

PMID:
11207428
16.

Conserved developmental transcriptomes in evolutionarily divergent species.

Parikh A, Miranda ER, Katoh-Kurasawa M, Fuller D, Rot G, Zagar L, Curk T, Sucgang R, Chen R, Zupan B, Loomis WF, Kuspa A, Shaulsky G.

Genome Biol. 2010;11(3):R35. doi: 10.1186/gb-2010-11-3-r35. Epub 2010 Mar 17.

17.

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.

Ullmann JF, Watson C, Janke AL, Kurniawan ND, Reutens DC.

Neuroimage. 2013 Sep;78:196-203. doi: 10.1016/j.neuroimage.2013.04.008. Epub 2013 Apr 12.

PMID:
23587687
18.

A spatio-temporal latent atlas for semi-supervised learning of fetal brain segmentations and morphological age estimation.

Dittrich E, Riklin Raviv T, Kasprian G, Donner R, Brugger PC, Prayer D, Langs G.

Med Image Anal. 2014 Jan;18(1):9-21. doi: 10.1016/j.media.2013.08.004. Epub 2013 Aug 30.

PMID:
24080527
19.

Spatiotemporal dynamics of the postnatal developing primate brain transcriptome.

Bakken TE, Miller JA, Luo R, Bernard A, Bennett JL, Lee CK, Bertagnolli D, Parikshak NN, Smith KA, Sunkin SM, Amaral DG, Geschwind DH, Lein ES.

Hum Mol Genet. 2015 Aug 1;24(15):4327-39. doi: 10.1093/hmg/ddv166. Epub 2015 May 7.

20.

An integrative analysis of regional gene expression profiles in the human brain.

Myers EM, Bartlett CW, Machiraju R, Bohland JW.

Methods. 2015 Feb;73:54-70. doi: 10.1016/j.ymeth.2014.12.010. Epub 2014 Dec 15.

PMID:
25524419
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