Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 105

Similar articles for PubMed (Select 24678044)

1.

Shedding light on black boxes in protein identification.

Vaudel M, Venne AS, Berven FS, Zahedi RP, Martens L, Barsnes H.

Proteomics. 2014 May;14(9):1001-5. doi: 10.1002/pmic.201300488. Epub 2014 Mar 20.

PMID:
24678044
2.

compomics-utilities: an open-source Java library for computational proteomics.

Barsnes H, Vaudel M, Colaert N, Helsens K, Sickmann A, Berven FS, Martens L.

BMC Bioinformatics. 2011 Mar 8;12:70. doi: 10.1186/1471-2105-12-70.

3.

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542.

4.

Proteomics made more accessible.

Mikalsen SO.

Proteomics. 2014 May;14(9):989-90. doi: 10.1002/pmic.201400064.

PMID:
24648354
5.

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics.

Deutsch EW, Lam H, Aebersold R.

Physiol Genomics. 2008 Mar 14;33(1):18-25. doi: 10.1152/physiolgenomics.00298.2007. Epub 2008 Jan 22. Review.

6.

TOPP--the OpenMS proteomics pipeline.

Kohlbacher O, Reinert K, Gröpl C, Lange E, Pfeifer N, Schulz-Trieglaff O, Sturm M.

Bioinformatics. 2007 Jan 15;23(2):e191-7.

7.

PRIDE: the proteomics identifications database.

Martens L, Hermjakob H, Jones P, Adamski M, Taylor C, States D, Gevaert K, Vandekerckhove J, Apweiler R.

Proteomics. 2005 Aug;5(13):3537-45. Erratum in: Proteomics. 2005 Oct;5(15):4046.

PMID:
16041671
8.

ProteomeCommons.org JAF: reference information and tools for proteomics.

Falkner JA, Falkner JW, Andrews PC.

Bioinformatics. 2006 Mar 1;22(5):632-3. Epub 2006 Jan 24.

9.

Analysis of mass spectrometry data in proteomics.

Matthiesen R, Jensen ON.

Methods Mol Biol. 2008;453:105-22. doi: 10.1007/978-1-60327-429-6_4.

PMID:
18712299
10.

The wildcat toolbox: a set of perl script utilities for use in peptide mass spectral database searching and proteomics experiments.

Haynes PA, Miller S, Radabaugh T, Galligan M, Breci L, Rohrbough J, Hickman F, Merchant N.

J Biomol Tech. 2006 Apr;17(2):97-102.

11.
12.

ProteoCloud: a full-featured open source proteomics cloud computing pipeline.

Muth T, Peters J, Blackburn J, Rapp E, Martens L.

J Proteomics. 2013 Aug 2;88:104-8. doi: 10.1016/j.jprot.2012.12.026. Epub 2013 Jan 8.

PMID:
23305951
13.

Recent developments in proteome informatics for mass spectrometry analysis.

Wright JC, Hubbard SJ.

Comb Chem High Throughput Screen. 2009 Feb;12(2):194-202. Review.

PMID:
19199887
14.

Combining quantitative proteomics data processing workflows for greater sensitivity.

Colaert N, Van Huele C, Degroeve S, Staes A, Vandekerckhove J, Gevaert K, Martens L.

Nat Methods. 2011 Jun;8(6):481-3. doi: 10.1038/nmeth.1604. Epub 2011 May 8.

PMID:
21552256
15.

A semantic proteomics dashboard (SemPoD) for data management in translational research.

Jayapandian CP, Zhao M, Ewing RM, Zhang GQ, Sahoo SS.

BMC Syst Biol. 2012;6 Suppl 3:S20. doi: 10.1186/1752-0509-6-S3-S20. Epub 2012 Dec 17.

16.

Bioinformatics challenges in mass spectrometry-driven proteomics.

Martens L.

Methods Mol Biol. 2011;753:359-71. doi: 10.1007/978-1-61779-148-2_24.

PMID:
21604135
17.

Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.

Gehlenborg N, Yan W, Lee IY, Yoo H, Nieselt K, Hwang D, Aebersold R, Hood L.

Bioinformatics. 2009 Mar 1;25(5):682-3. doi: 10.1093/bioinformatics/btp005. Epub 2009 Jan 6.

18.

Proteome informatics I: bioinformatics tools for processing experimental data.

Palagi PM, Hernandez P, Walther D, Appel RD.

Proteomics. 2006 Oct;6(20):5435-44. Review.

PMID:
16991191
19.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

J Proteome Res. 2009 Jun;8(6):3037-43. doi: 10.1021/pr900189c.

PMID:
19354269
20.

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk