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Items: 1 to 20 of 96

1.

Exploring the biological and chemical complexity of the ligases.

Holliday GL, Rahman SA, Furnham N, Thornton JM.

J Mol Biol. 2014 May 15;426(10):2098-111. doi: 10.1016/j.jmb.2014.03.008. Epub 2014 Mar 21. Review.

2.

Evolution of function in protein superfamilies, from a structural perspective.

Todd AE, Orengo CA, Thornton JM.

J Mol Biol. 2001 Apr 6;307(4):1113-43.

PMID:
11286560
3.

Structure, function and dynamics in the mur family of bacterial cell wall ligases.

Smith CA.

J Mol Biol. 2006 Sep 29;362(4):640-55. Epub 2006 Aug 1. Review.

PMID:
16934839
4.

Creation of a pluripotent ubiquitin-conjugating enzyme.

Ptak C, Gwozd C, Huzil JT, Gwozd TJ, Garen G, Ellison MJ.

Mol Cell Biol. 2001 Oct;21(19):6537-48.

5.

Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains.

Ho CK, Shuman S.

Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12709-14. Epub 2002 Sep 12. Erratum in: Proc Natl Acad Sci U S A 2002 Oct 15;99(21):13961.

7.

Glutathione synthetase homologs encode alpha-L-glutamate ligases for methanogenic coenzyme F420 and tetrahydrosarcinapterin biosyntheses.

Li H, Xu H, Graham DE, White RH.

Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9785-90. Epub 2003 Aug 8.

8.

Structure of Escherichia coli UDP-N-acetylmuramoyl:L-alanine ligase (MurC).

Deva T, Baker EN, Squire CJ, Smith CA.

Acta Crystallogr D Biol Crystallogr. 2006 Dec;62(Pt 12):1466-74. Epub 2006 Nov 23.

PMID:
17139082
9.

DNA ligases in the repair and replication of DNA.

Timson DJ, Singleton MR, Wigley DB.

Mutat Res. 2000 Aug 30;460(3-4):301-18. Review.

PMID:
10946235
10.
11.

c-MIR, a human E3 ubiquitin ligase, is a functional homolog of herpesvirus proteins MIR1 and MIR2 and has similar activity.

Goto E, Ishido S, Sato Y, Ohgimoto S, Ohgimoto K, Nagano-Fujii M, Hotta H.

J Biol Chem. 2003 Apr 25;278(17):14657-68. Epub 2003 Feb 11.

12.

Targeting E3 ubiquitin ligases for cancer therapy.

Sun Y.

Cancer Biol Ther. 2003 Nov-Dec;2(6):623-9. Review.

PMID:
14688465
13.

NAD+-dependent DNA ligase encoded by a eukaryotic virus.

Sriskanda V, Moyer RW, Shuman S.

J Biol Chem. 2001 Sep 28;276(39):36100-9. Epub 2001 Jul 17.

14.

Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.

Almonacid DE, Yera ER, Mitchell JB, Babbitt PC.

PLoS Comput Biol. 2010 Mar 12;6(3):e1000700. doi: 10.1371/journal.pcbi.1000700.

15.

Evolution and classification of P-loop kinases and related proteins.

Leipe DD, Koonin EV, Aravind L.

J Mol Biol. 2003 Oct 31;333(4):781-815.

PMID:
14568537
16.

Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies.

Furnham N, Sillitoe I, Holliday GL, Cuff AL, Laskowski RA, Orengo CA, Thornton JM.

PLoS Comput Biol. 2012;8(3):e1002403. doi: 10.1371/journal.pcbi.1002403. Epub 2012 Mar 1.

17.

Early evolution of the biotin-dependent carboxylase family.

Lombard J, Moreira D.

BMC Evol Biol. 2011 Aug 9;11:232. doi: 10.1186/1471-2148-11-232. Erratum in: BMC Evol Biol. 2012;12:117.

18.

The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases.

Shuman S, Lima CD.

Curr Opin Struct Biol. 2004 Dec;14(6):757-64. Review.

PMID:
15582400
19.

Molecular evolution of the LNX gene family.

Flynn M, Saha O, Young P.

BMC Evol Biol. 2011 Aug 9;11:235. doi: 10.1186/1471-2148-11-235.

20.

The RelA/SpoT homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life.

Atkinson GC, Tenson T, Hauryliuk V.

PLoS One. 2011;6(8):e23479. doi: 10.1371/journal.pone.0023479. Epub 2011 Aug 9.

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