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Items: 1 to 20 of 123

1.

Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation.

Collins MO, Wright JC, Jones M, Rayner JC, Choudhary JS.

J Proteomics. 2014 May 30;103:1-14. doi: 10.1016/j.jprot.2014.03.010. Epub 2014 Mar 21.

2.

Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator.

Wright JC, Collins MO, Yu L, Käll L, Brosch M, Choudhary JS.

Mol Cell Proteomics. 2012 Aug;11(8):478-91. doi: 10.1074/mcp.O111.014522. Epub 2012 Apr 6.

3.

Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides.

Kim MS, Zhong J, Kandasamy K, Delanghe B, Pandey A.

Proteomics. 2011 Jun;11(12):2568-72. doi: 10.1002/pmic.201000547. Epub 2011 May 20.

5.

Comparison of alternative MS/MS and bioinformatics approaches for confident phosphorylation site localization.

Wiese H, Kuhlmann K, Wiese S, Stoepel NS, Pawlas M, Meyer HE, Stephan C, Eisenacher M, Drepper F, Warscheid B.

J Proteome Res. 2014 Feb 7;13(2):1128-37. doi: 10.1021/pr400402s. Epub 2014 Jan 3.

PMID:
24364495
6.

Effects of electron-transfer coupled with collision-induced dissociation (ET/CID) on doubly charged peptides and phosphopeptides.

Liu CW, Lai CC.

J Am Soc Mass Spectrom. 2011 Jan;22(1):57-66. doi: 10.1007/s13361-010-0020-9. Epub 2011 Jan 27.

PMID:
21472544
7.

Sequential abundant ion fragmentation analysis (SAIFA): an alternative approach for phosphopeptide identification using an ion trap mass spectrometer.

Chesnik M, Halligan B, Olivier M, Mirza SP.

Anal Biochem. 2011 Nov 15;418(2):197-203. doi: 10.1016/j.ab.2011.07.026. Epub 2011 Jul 30.

8.

Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra.

Sun RX, Dong MQ, Song CQ, Chi H, Yang B, Xiu LY, Tao L, Jing ZY, Liu C, Wang LH, Fu Y, He SM.

J Proteome Res. 2010 Dec 3;9(12):6354-67. doi: 10.1021/pr100648r. Epub 2010 Nov 12.

PMID:
20883037
9.

Confident phosphorylation site localization using the Mascot Delta Score.

Savitski MM, Lemeer S, Boesche M, Lang M, Mathieson T, Bantscheff M, Kuster B.

Mol Cell Proteomics. 2011 Feb;10(2):M110.003830. doi: 10.1074/mcp.M110.003830. Epub 2010 Nov 6.

10.

Phosphopeptide fragmentation and analysis by mass spectrometry.

Boersema PJ, Mohammed S, Heck AJ.

J Mass Spectrom. 2009 Jun;44(6):861-78. doi: 10.1002/jms.1599. Review.

PMID:
19504542
11.

Mass spectrometry-driven phosphoproteomics: patterning the systems biology mosaic.

Jünger MA, Aebersold R.

Wiley Interdiscip Rev Dev Biol. 2014 Jan-Feb;3(1):83-112. doi: 10.1002/wdev.121. Epub 2013 Jul 2. Review.

PMID:
24902836
12.

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

Molina H, Horn DM, Tang N, Mathivanan S, Pandey A.

Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2199-204. Epub 2007 Feb 7.

13.

Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment.

Kelstrup CD, Hekmat O, Francavilla C, Olsen JV.

J Proteome Res. 2011 Jul 1;10(7):2937-48. doi: 10.1021/pr200154t. Epub 2011 Apr 28.

PMID:
21526838
14.

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.

Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Jünger MA, Eng JK, Aebersold R, Tao WA.

Mol Biosyst. 2007 Apr;3(4):275-86. Epub 2007 Feb 19.

PMID:
17372656
15.

Large-scale identification of endogenous secretory peptides using electron transfer dissociation mass spectrometry.

Sasaki K, Osaki T, Minamino N.

Mol Cell Proteomics. 2013 Mar;12(3):700-9. doi: 10.1074/mcp.M112.017400. Epub 2012 Dec 18.

16.

Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications.

Wiesner J, Premsler T, Sickmann A.

Proteomics. 2008 Nov;8(21):4466-83. doi: 10.1002/pmic.200800329. Review.

PMID:
18972526
17.

A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics.

Marx H, Lemeer S, Schliep JE, Matheron L, Mohammed S, Cox J, Mann M, Heck AJ, Kuster B.

Nat Biotechnol. 2013 Jun;31(6):557-64. doi: 10.1038/nbt.2585. Epub 2013 May 19.

PMID:
23685481
18.

Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry.

Sweet SM, Bailey CM, Cunningham DL, Heath JK, Cooper HJ.

Mol Cell Proteomics. 2009 May;8(5):904-12. doi: 10.1074/mcp.M800451-MCP200. Epub 2009 Jan 8.

19.

High-energy electron transfer dissociation (HE-ETD) using alkali metal targets for sequence analysis of post-translational peptides.

Hayakawa S, Matsumoto S, Hashimoto M, Iwamoto K, Nagao H, Toyoda M, Shigeri Y, Tajiri M, Wada Y.

J Am Soc Mass Spectrom. 2010 Sep;21(9):1482-9. doi: 10.1016/j.jasms.2010.05.010. Epub 2010 Jun 9.

20.

Enhanced characterization of singly protonated phosphopeptide ions by femtosecond laser-induced ionization/dissociation tandem mass spectrometry (fs-LID-MS/MS).

Smith SA, Kalcic CL, Safran KA, Stemmer PM, Dantus M, Reid GE.

J Am Soc Mass Spectrom. 2010 Dec;21(12):2031-40. doi: 10.1016/j.jasms.2010.08.016. Epub 2010 Oct 1.

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