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Results: 1 to 20 of 94

1.

Network and matrix analysis of the respiratory disease interactome.

Garcia B, Datta G, Cosgrove GP, Strong M.

BMC Syst Biol. 2014 Mar 22;8:34. doi: 10.1186/1752-0509-8-34.

PMID:
24655443
[PubMed - in process]
Free PMC Article
2.

Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database.

King BL, Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ.

PLoS One. 2012;7(11):e46524. doi: 10.1371/journal.pone.0046524. Epub 2012 Nov 7.

PMID:
23144783
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Exploring matrix factorization techniques for significant genes identification of Alzheimer's disease microarray gene expression data.

Kong W, Mou X, Hu X.

BMC Bioinformatics. 2011;12 Suppl 5:S7. doi: 10.1186/1471-2105-12-S5-S7. Epub 2011 Jul 27.

PMID:
21989140
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study.

Feltus FA, Ficklin SP, Gibson SM, Smith MC.

BMC Syst Biol. 2013 Jun 5;7:44. doi: 10.1186/1752-0509-7-44.

PMID:
23738693
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Network properties of complex human disease genes identified through genome-wide association studies.

Barrenas F, Chavali S, Holme P, Mobini R, Benson M.

PLoS One. 2009 Nov 30;4(11):e8090. doi: 10.1371/journal.pone.0008090.

PMID:
19956617
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions.

Venancio TM, Balaji S, Geetha S, Aravind L.

Mol Biosyst. 2010 Aug;6(8):1475-91. doi: 10.1039/c002567b. Epub 2010 Jun 2.

PMID:
20517567
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The orphan disease networks.

Zhang M, Zhu C, Jacomy A, Lu LJ, Jegga AG.

Am J Hum Genet. 2011 Jun 10;88(6):755-66. doi: 10.1016/j.ajhg.2011.05.006.

PMID:
21664998
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Network-based methods for human disease gene prediction.

Wang X, Gulbahce N, Yu H.

Brief Funct Genomics. 2011 Sep;10(5):280-93. doi: 10.1093/bfgp/elr024. Epub 2011 Jul 15. Review.

PMID:
21764832
[PubMed - indexed for MEDLINE]
9.

Inferring gene-phenotype associations via global protein complex network propagation.

Yang P, Li X, Wu M, Kwoh CK, Ng SK.

PLoS One. 2011;6(7):e21502. doi: 10.1371/journal.pone.0021502. Epub 2011 Jul 25.

PMID:
21799737
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

DTome: a web-based tool for drug-target interactome construction.

Sun J, Wu Y, Xu H, Zhao Z.

BMC Bioinformatics. 2012 Jun 11;13 Suppl 9:S7. doi: 10.1186/1471-2105-13-S9-S7.

PMID:
22901092
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identification of common biological pathways and drug targets across multiple respiratory viruses based on human host gene expression analysis.

Smith SB, Dampier W, Tozeren A, Brown JR, Magid-Slav M.

PLoS One. 2012;7(3):e33174. doi: 10.1371/journal.pone.0033174. Epub 2012 Mar 14.

PMID:
22432004
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Inference of gene pathways using mixture Bayesian networks.

Ko Y, Zhai C, Rodriguez-Zas S.

BMC Syst Biol. 2009 May 19;3:54. doi: 10.1186/1752-0509-3-54.

PMID:
19454027
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A systems biology approach to drug discovery.

Zhu J, Zhang B, Schadt EE.

Adv Genet. 2008;60:603-35. doi: 10.1016/S0065-2660(07)00421-X. Review.

PMID:
18358334
[PubMed - indexed for MEDLINE]
14.

A pathway-based view of human diseases and disease relationships.

Li Y, Agarwal P.

PLoS One. 2009;4(2):e4346. doi: 10.1371/journal.pone.0004346. Epub 2009 Feb 4.

PMID:
19194489
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Moving toward a system genetics view of disease.

Sieberts SK, Schadt EE.

Mamm Genome. 2007 Jul;18(6-7):389-401. Epub 2007 Jul 26. Review.

PMID:
17653589
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Drug-target network.

Yildirim MA, Goh KI, Cusick ME, Barabási AL, Vidal M.

Nat Biotechnol. 2007 Oct;25(10):1119-26.

PMID:
17921997
[PubMed - indexed for MEDLINE]
17.

A comprehensive network and pathway analysis of candidate genes in major depressive disorder.

Jia P, Kao CF, Kuo PH, Zhao Z.

BMC Syst Biol. 2011 Dec 23;5 Suppl 3:S12. doi: 10.1186/1752-0509-5-S3-S12. Epub 2011 Dec 23.

PMID:
22784618
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Vavien: an algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks.

Erten S, Bebek G, Koyutürk M.

J Comput Biol. 2011 Nov;18(11):1561-74. doi: 10.1089/cmb.2011.0154. Epub 2011 Oct 28.

PMID:
22035267
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A transcriptional dynamic network during Arabidopsis thaliana pollen development.

Wang J, Qiu X, Li Y, Deng Y, Shi T.

BMC Syst Biol. 2011 Dec 23;5 Suppl 3:S8. doi: 10.1186/1752-0509-5-S3-S8. Epub 2011 Dec 23.

PMID:
22784627
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study.

Davis AP, Murphy CG, Rosenstein MC, Wiegers TC, Mattingly CJ.

BMC Med Genomics. 2008 Oct 9;1:48. doi: 10.1186/1755-8794-1-48.

PMID:
18845002
[PubMed]
Free PMC Article

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