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Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.

Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A.

J Biotechnol. 2014 Nov 20;190:85-95. doi: 10.1016/j.jbiotec.2014.03.013. Epub 2014 Mar 15.


The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.

Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A.

BMC Genomics. 2012 Mar 23;13:112. doi: 10.1186/1471-2164-13-112.


Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media.

Schwientek P, Wendler S, Neshat A, Eirich C, Rückert C, Klein A, Wehmeier UF, Kalinowski J, Stoye J, Pühler A.

J Biotechnol. 2013 Aug 20;167(2):166-77. doi: 10.1016/j.jbiotec.2012.10.019. Epub 2012 Nov 8.


Comprehensive proteome analysis of Actinoplanes sp. SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster.

Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A.

J Proteomics. 2015 Jul 1;125:1-16. doi: 10.1016/j.jprot.2015.04.013. Epub 2015 Apr 18.


The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism.

Wendler S, Hürtgen D, Kalinowski J, Klein A, Niehaus K, Schulte F, Schwientek P, Wehlmann H, Wehmeier UF, Pühler A.

J Biotechnol. 2013 Aug 20;167(2):178-89. doi: 10.1016/j.jbiotec.2012.08.011. Epub 2012 Aug 31.


Identification, cloning, expression, and characterization of the extracellular acarbose-modifying glycosyltransferase, AcbD, from Actinoplanes sp. strain SE50.

Hemker M, Stratmann A, Goeke K, Schröder W, Lenz J, Piepersberg W, Pape H.

J Bacteriol. 2001 Aug;183(15):4484-92.


Reconstruction and in silico analysis of an Actinoplanes sp. SE50/110 genome-scale metabolic model for acarbose production.

Wang Y, Xu N, Ye C, Liu L, Shi Z, Wu J.

Front Microbiol. 2015 Jun 25;6:632. doi: 10.3389/fmicb.2015.00632. eCollection 2015.


The acbH gene of Actinoplanes sp. encodes a solute receptor with binding activities for acarbose and longer homologs.

Brunkhorst C, Wehmeier UF, Piepersberg W, Schneider E.

Res Microbiol. 2005 Apr;156(3):322-7. Epub 2004 Dec 22.


Comparative proteome analysis of Actinoplanes sp. SE50/110 grown with maltose or glucose shows minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters.

Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A.

J Proteomics. 2016 Jan 10;131:140-8. doi: 10.1016/j.jprot.2015.10.023. Epub 2015 Oct 25.


Genetic engineering in Actinoplanes sp. SE50/110 - development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors.

Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J.

J Biotechnol. 2016 Aug 20;232:79-88. doi: 10.1016/j.jbiotec.2016.05.012. Epub 2016 May 12.


Biotechnology and molecular biology of the alpha-glucosidase inhibitor acarbose.

Wehmeier UF, Piepersberg W.

Appl Microbiol Biotechnol. 2004 Feb;63(6):613-25. Epub 2003 Dec 11. Review.


Identification of a 1-epi-valienol 7-kinase activity in the producer of acarbose, Actinoplanes sp. SE50/110.

Zhang CS, Podeschwa M, Block O, Altenbach HJ, Piepersberg W, Wehmeier UF.

FEBS Lett. 2003 Apr 10;540(1-3):53-7.


Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape.

Irla M, Neshat A, Brautaset T, Rückert C, Kalinowski J, Wendisch VF.

BMC Genomics. 2015 Feb 14;16:73. doi: 10.1186/s12864-015-1239-4.


An optimized industrial fermentation processes for acarbose production by Actinoplanes sp. A56.

Li KT, Zhou J, Wei SJ, Cheng X.

Bioresour Technol. 2012 Aug;118:580-3. doi: 10.1016/j.biortech.2012.05.013. Epub 2012 May 11.


Biosynthesis of the C(7)-cyclitol moiety of acarbose in Actinoplanes species SE50/110. 7-O-phosphorylation of the initial cyclitol precursor leads to proposal of a new biosynthetic pathway.

Zhang CS, Stratmann A, Block O, Brückner R, Podeschwa M, Altenbach HJ, Wehmeier UF, Piepersberg W.

J Biol Chem. 2002 Jun 21;277(25):22853-62. Epub 2002 Apr 5.


The transcriptional landscape of Chlamydia pneumoniae.

Albrecht M, Sharma CM, Dittrich MT, Müller T, Reinhardt R, Vogel J, Rudel T.

Genome Biol. 2011 Oct 11;12(10):R98. doi: 10.1186/gb-2011-12-10-r98.


Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011.

Sallet E, Roux B, Sauviac L, Jardinaud MF, Carrère S, Faraut T, de Carvalho-Niebel F, Gouzy J, Gamas P, Capela D, Bruand C, Schiex T.

DNA Res. 2013 Aug;20(4):339-54. doi: 10.1093/dnares/dst014. Epub 2013 Apr 18.


Three trehalose synthetic pathways in the acarbose-producing Actinoplanes sp. SN223/29 and evidence for the TreY role in biosynthesis of component C.

Lee JS, Hai T, Pape H, Kim TJ, Suh JW.

Appl Microbiol Biotechnol. 2008 Oct;80(5):767-78. doi: 10.1007/s00253-008-1582-3. Epub 2008 Jul 29.


Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.

Pfeifer-Sancar K, Mentz A, Rückert C, Kalinowski J.

BMC Genomics. 2013 Dec 17;14:888. doi: 10.1186/1471-2164-14-888.

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