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Results: 1 to 20 of 115

Similar articles for PubMed (Select 24637013)

1.

PolyTB: a genomic variation map for Mycobacterium tuberculosis.

Coll F, Preston M, Guerra-Assunção JA, Hill-Cawthorn G, Harris D, Perdigão J, Viveiros M, Portugal I, Drobniewski F, Gagneux S, Glynn JR, Pain A, Parkhill J, McNerney R, Martin N, Clark TG.

Tuberculosis (Edinb). 2014 May;94(3):346-54. doi: 10.1016/j.tube.2014.02.005. Epub 2014 Feb 15.

2.

[Future prospects of molecular epidemiology in tuberculosis].

Matsumoto T, Iwamoto T.

Kekkaku. 2009 Dec;84(12):783-4. Japanese.

PMID:
20077862
3.

Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints.

Niemann S, Köser CU, Gagneux S, Plinke C, Homolka S, Bignell H, Carter RJ, Cheetham RK, Cox A, Gormley NA, Kokko-Gonzales P, Murray LJ, Rigatti R, Smith VP, Arends FP, Cox HS, Smith G, Archer JA.

PLoS One. 2009 Oct 12;4(10):e7407. doi: 10.1371/journal.pone.0007407.

4.

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences.

Coll F, Mallard K, Preston MD, Bentley S, Parkhill J, McNerney R, Martin N, Clark TG.

Bioinformatics. 2012 Nov 15;28(22):2991-3. doi: 10.1093/bioinformatics/bts544. Epub 2012 Sep 26.

5.

tbvar: A comprehensive genome variation resource for Mycobacterium tuberculosis.

Joshi KR, Dhiman H, Scaria V.

Database (Oxford). 2014 Jan 9;2014:bat083. doi: 10.1093/database/bat083. Print 2014.

6.

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.

Benavente ED, Coll F, Furnham N, McNerney R, Glynn JR, Campino S, Pain A, Mohareb FR, Clark TG.

BMC Bioinformatics. 2015 May 13;16:155. doi: 10.1186/s12859-015-0603-3.

7.

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology.

Chernyaeva EN, Shulgina MV, Rotkevich MS, Dobrynin PV, Simonov SA, Shitikov EA, Ischenko DS, Karpova IY, Kostryukova ES, Ilina EN, Govorun VM, Zhuravlev VY, Manicheva OA, Yablonsky PK, Isaeva YD, Nosova EY, Mokrousov IV, Vyazovaya AA, Narvskaya OV, Lapidus AL, O'Brien SJ.

BMC Genomics. 2014 Apr 25;15:308. doi: 10.1186/1471-2164-15-308.

8.

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study.

Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, Kalinowski J, Niemann S.

PLoS Med. 2013;10(2):e1001387. doi: 10.1371/journal.pmed.1001387. Epub 2013 Feb 12.

9.

[Development of antituberculous drugs: current status and future prospects].

Tomioka H, Namba K.

Kekkaku. 2006 Dec;81(12):753-74. Review. Japanese.

PMID:
17240921
10.

High resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms.

Homolka S, Projahn M, Feuerriegel S, Ubben T, Diel R, Nübel U, Niemann S.

PLoS One. 2012;7(7):e39855. doi: 10.1371/journal.pone.0039855. Epub 2012 Jul 2.

11.

Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database.

Stucki D, Gagneux S.

Tuberculosis (Edinb). 2013 Jan;93(1):30-9. doi: 10.1016/j.tube.2012.11.002. Epub 2012 Dec 21. Review.

12.

[Frontier of mycobacterium research--host vs. mycobacterium].

Okada M, Shirakawa T.

Kekkaku. 2005 Sep;80(9):613-29. Japanese.

PMID:
16245793
13.

Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis.

Alland D, Lacher DW, Hazbón MH, Motiwala AS, Qi W, Fleischmann RD, Whittam TS.

J Clin Microbiol. 2007 Jan;45(1):39-46. Epub 2006 Nov 1.

14.

Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.

Kohl TA, Diel R, Harmsen D, Rothgänger J, Walter KM, Merker M, Weniger T, Niemann S.

J Clin Microbiol. 2014 Jul;52(7):2479-86. doi: 10.1128/JCM.00567-14. Epub 2014 Apr 30.

15.

Comparative genomic analysis of Mycobacterium tuberculosis clinical isolates.

Liu F, Hu Y, Wang Q, Li HM, Gao GF, Liu CH, Zhu B.

BMC Genomics. 2014 Jun 13;15:469. doi: 10.1186/1471-2164-15-469.

16.

[Population structure analysis of Mycobacterium tuberculosis Beijing family in Japan].

Iwamoto T.

Kekkaku. 2009 Dec;84(12):755-9. Japanese.

PMID:
20077859
17.

MGDD: Mycobacterium tuberculosis genome divergence database.

Vishnoi A, Srivastava A, Roy R, Bhattacharya A.

BMC Genomics. 2008 Aug 5;9:373. doi: 10.1186/1471-2164-9-373.

18.

Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints.

McEvoy CR, Cloete R, Müller B, Schürch AC, van Helden PD, Gagneux S, Warren RM, Gey van Pittius NC.

PLoS One. 2012;7(4):e30593. doi: 10.1371/journal.pone.0030593. Epub 2012 Apr 4.

19.

A new high-throughput AFLP approach for identification of new genetic polymorphism in the genome of the clonal microorganism Mycobacterium tuberculosis.

van den Braak N, Simons G, Gorkink R, Reijans M, Eadie K, Kremers K, van Soolingen D, Savelkoul P, Verbrugh H, van Belkum A.

J Microbiol Methods. 2004 Jan;56(1):49-62.

PMID:
14706750
20.

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study.

Walker TM, Ip CL, Harrell RH, Evans JT, Kapatai G, Dedicoat MJ, Eyre DW, Wilson DJ, Hawkey PM, Crook DW, Parkhill J, Harris D, Walker AS, Bowden R, Monk P, Smith EG, Peto TE.

Lancet Infect Dis. 2013 Feb;13(2):137-46. doi: 10.1016/S1473-3099(12)70277-3. Epub 2012 Nov 15.

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