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Polyphasic analysis of a middle ages coprolite microbiota, Belgium.

Appelt S, Armougom F, Le Bailly M, Robert C, Drancourt M.

PLoS One. 2014 Feb 28;9(2):e88376. doi: 10.1371/journal.pone.0088376. eCollection 2014.


Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

Lazarevic V, Whiteson K, Huse S, Hernandez D, Farinelli L, Osterås M, Schrenzel J, François P.

J Microbiol Methods. 2009 Dec;79(3):266-71. doi: 10.1016/j.mimet.2009.09.012. Epub 2009 Sep 29.


Viruses in a 14th-century coprolite.

Appelt S, Fancello L, Le Bailly M, Raoult D, Drancourt M, Desnues C.

Appl Environ Microbiol. 2014 May;80(9):2648-55. doi: 10.1128/AEM.03242-13. Epub 2014 Feb 7.


Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis.

Bogaert D, Keijser B, Huse S, Rossen J, Veenhoven R, van Gils E, Bruin J, Montijn R, Bonten M, Sanders E.

PLoS One. 2011 Feb 28;6(2):e17035. doi: 10.1371/journal.pone.0017035.


Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.

Xie G, Chain PS, Lo CC, Liu KL, Gans J, Merritt J, Qi F.

Mol Oral Microbiol. 2010 Dec;25(6):391-405. doi: 10.1111/j.2041-1014.2010.00587.x.


A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

Schwartz S, Friedberg I, Ivanov IV, Davidson LA, Goldsby JS, Dahl DB, Herman D, Wang M, Donovan SM, Chapkin RS.

Genome Biol. 2012 Apr 30;13(4):r32. doi: 10.1186/gb-2012-13-4-r32.


Cultivable bacterial microbiota of northern bobwhite (Colinus virginianus): a new reservoir of antimicrobial resistance?

Su H, McKelvey J, Rollins D, Zhang M, Brightsmith DJ, Derr J, Zhang S.

PLoS One. 2014 Jun 17;9(6):e99826. doi: 10.1371/journal.pone.0099826. eCollection 2014.


Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing.

Nam YD, Jung MJ, Roh SW, Kim MS, Bae JW.

PLoS One. 2011;6(7):e22109. doi: 10.1371/journal.pone.0022109. Epub 2011 Jul 29.


The human oral microbiome.

Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG.

J Bacteriol. 2010 Oct;192(19):5002-17. doi: 10.1128/JB.00542-10. Epub 2010 Jul 23.


Metagenomic analysis of the gut microbiota of the Timber Rattlesnake, Crotalus horridus.

McLaughlin RW, Cochran PA, Dowd SE.

Mol Biol Rep. 2015 Jul;42(7):1187-95. doi: 10.1007/s11033-015-3854-1. Epub 2015 Feb 7.


Bacterial community composition of the gut microbiota of Cylindroiulus fulviceps (diplopoda) as revealed by molecular fingerprinting and cloning.

Knapp BA, Seeber J, Rief A, Meyer E, Insam H.

Folia Microbiol (Praha). 2010 Sep;55(5):489-96. doi: 10.1007/s12223-010-0081-y. Epub 2010 Oct 13.


Sputum microbiota in tuberculosis as revealed by 16S rRNA pyrosequencing.

Cheung MK, Lam WY, Fung WY, Law PT, Au CH, Nong W, Kam KM, Kwan HS, Tsui SK.

PLoS One. 2013;8(1):e54574. doi: 10.1371/journal.pone.0054574. Epub 2013 Jan 24.


Sympatric chimpanzees and gorillas harbor convergent gut microbial communities.

Moeller AH, Peeters M, Ndjango JB, Li Y, Hahn BH, Ochman H.

Genome Res. 2013 Oct;23(10):1715-20. doi: 10.1101/gr.154773.113. Epub 2013 Jun 26.


Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons.

Shepherd ML, Swecker WS Jr, Jensen RV, Ponder MA.

FEMS Microbiol Lett. 2012 Jan;326(1):62-8. doi: 10.1111/j.1574-6968.2011.02434.x. Epub 2011 Nov 2.


The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics.

Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D.

Eur J Clin Microbiol Infect Dis. 2013 May;32(5):637-45. doi: 10.1007/s10096-012-1787-3. Epub 2013 Jan 6.


Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome.

Jones BV, Sun F, Marchesi JR.

BMC Genomics. 2010 Jan 19;11:46. doi: 10.1186/1471-2164-11-46.


The human salivary microbiome exhibits temporal stability in bacterial diversity.

Cameron SJ, Huws SA, Hegarty MJ, Smith DP, Mur LA.

FEMS Microbiol Ecol. 2015 Sep;91(9):fiv091. doi: 10.1093/femsec/fiv091. Epub 2015 Jul 22.


Molecular characterization of the cloacal microbiota of wild and captive parrots.

Xenoulis PG, Gray PL, Brightsmith D, Palculict B, Hoppes S, Steiner JM, Tizard I, Suchodolski JS.

Vet Microbiol. 2010 Dec 15;146(3-4):320-5. doi: 10.1016/j.vetmic.2010.05.024. Epub 2010 May 27.


Gut microbiota contributes to the growth of fast-growing transgenic common carp (Cyprinus carpio L.).

Li X, Yan Q, Xie S, Hu W, Yu Y, Hu Z.

PLoS One. 2013 May 31;8(5):e64577. doi: 10.1371/journal.pone.0064577. Print 2013.

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