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Results: 1 to 20 of 104

1.

Next-Generation Sequencing to Help Monitor Patients Infected with HIV: Ready for Clinical Use?

Gibson RM, Schmotzer CL, Quiñones-Mateu ME.

Curr Infect Dis Rep. 2014 Apr;16(4):401. doi: 10.1007/s11908-014-0401-5.

PMID:
24585216
[PubMed]
2.

Study of the impact of HIV genotypic drug resistance testing on therapy efficacy.

Van Vaerenbergh K.

Verh K Acad Geneeskd Belg. 2001;63(5):447-73. Review.

PMID:
11813503
[PubMed - indexed for MEDLINE]
3.

Contribution of human immunodeficiency virus type 1 minority variants to reduced drug susceptibility in patients on an integrase strand transfer inhibitor-based therapy.

Gibson RM, Weber J, Winner D, Miller MD, Quiñones-Mateu ME.

PLoS One. 2014 Aug 11;9(8):e104512. doi: 10.1371/journal.pone.0104512. eCollection 2014.

PMID:
25110880
[PubMed - in process]
Free PMC Article
4.

Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism.

Archer J, Weber J, Henry K, Winner D, Gibson R, Lee L, Paxinos E, Arts EJ, Robertson DL, Mimms L, Quiñones-Mateu ME.

PLoS One. 2012;7(11):e49602. doi: 10.1371/journal.pone.0049602. Epub 2012 Nov 14.

PMID:
23166726
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism.

Gibson RM, Meyer AM, Winner D, Archer J, Feyertag F, Ruiz-Mateos E, Leal M, Robertson DL, Schmotzer CL, Quiñones-Mateu ME.

Antimicrob Agents Chemother. 2014 Apr;58(4):2167-85. doi: 10.1128/AAC.02710-13. Epub 2014 Jan 27.

PMID:
24468782
[PubMed - in process]
6.

A genotypic test for HIV-1 tropism combining Sanger sequencing with ultradeep sequencing predicts virologic response in treatment-experienced patients.

Kagan RM, Johnson EP, Siaw M, Biswas P, Chapman DS, Su Z, Platt JL, Pesano RL.

PLoS One. 2012;7(9):e46334. doi: 10.1371/journal.pone.0046334. Epub 2012 Sep 27.

PMID:
23029482
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Low-abundance HIV drug-resistant viral variants in treatment-experienced persons correlate with historical antiretroviral use.

Le T, Chiarella J, Simen BB, Hanczaruk B, Egholm M, Landry ML, Dieckhaus K, Rosen MI, Kozal MJ.

PLoS One. 2009 Jun 29;4(6):e6079. doi: 10.1371/journal.pone.0006079.

PMID:
19562031
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach.

Sierra S, Kaiser R, Lübke N, Thielen A, Schuelter E, Heger E, Däumer M, Reuter S, Esser S, Fätkenheuer G, Pfister H, Oette M, Lengauer T.

J Vis Exp. 2011 Dec 1;(58). pii: 3264. doi: 10.3791/3264.

PMID:
22157596
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data.

Pfeifer N, Lengauer T.

Bioinformatics. 2012 Sep 15;28(18):i589-i595. doi: 10.1093/bioinformatics/bts373.

PMID:
22962486
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Next-generation sequencing to assess HIV tropism.

Swenson LC, Däumer M, Paredes R.

Curr Opin HIV AIDS. 2012 Sep;7(5):478-85. doi: 10.1097/COH.0b013e328356e9da. Review.

PMID:
22832710
[PubMed - indexed for MEDLINE]
11.

Chemokine (C-C motif) receptor 5-using envelopes predominate in dual/mixed-tropic HIV from the plasma of drug-naive individuals.

Irlbeck DM, Amrine-Madsen H, Kitrinos KM, Labranche CC, Demarest JF.

AIDS. 2008 Jul 31;22(12):1425-31. doi: 10.1097/QAD.0b013e32830184ba.

PMID:
18614865
[PubMed - indexed for MEDLINE]
12.

Applications of next-generation sequencing technologies to diagnostic virology.

Barzon L, Lavezzo E, Militello V, Toppo S, Palù G.

Int J Mol Sci. 2011;12(11):7861-84. doi: 10.3390/ijms12117861. Epub 2011 Nov 14.

PMID:
22174638
[PubMed - in process]
Free PMC Article
13.

Clinical utility of maraviroc.

Parra J, Portilla J, Pulido F, Sánchez-de la Rosa R, Alonso-Villaverde C, Berenguer J, Blanco JL, Domingo P, Dronda F, Galera C, Gutiérrez F, Kindelán JM, Knobel H, Leal M, López-Aldeguer J, Mariño A, Miralles C, Moltó J, Ortega E, Oteo JA.

Clin Drug Investig. 2011;31(8):527-42. doi: 10.2165/11590700-000000000-00000. Review.

PMID:
21595497
[PubMed - indexed for MEDLINE]
14.

Deep Sequencing of HIV: Clinical and Research Applications.

Chabria SB, Gupta S, Kozal MJ.

Annu Rev Genomics Hum Genet. 2014 May 9. [Epub ahead of print]

PMID:
24821496
[PubMed - as supplied by publisher]
15.

Molecular biological assessment methods and understanding the course of the HIV infection.

Katzenstein TL.

APMIS Suppl. 2003;(114):1-37. Review.

PMID:
14626050
[PubMed - indexed for MEDLINE]
16.

HIV-1 tropism determination using a phenotypic Env recombinant viral assay highlights overestimation of CXCR4-usage by genotypic prediction algorithms for CRRF01_AE and CRF02_AG.

Mulinge M, Lemaire M, Servais JY, Rybicki A, Struck D, da Silva ES, Verhofstede C, Lie Y, Seguin-Devaux C, Schmit JC, Bercoff DP.

PLoS One. 2013 May 8;8(5):e60566. doi: 10.1371/journal.pone.0060566. Print 2013.

PMID:
23667426
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

High prevalence of X4/DM-tropic variants in children and adolescents infected with HIV-1 by vertical transmission.

Briz V, García D, Méndez-Lagares G, Ruiz-Mateos E, de Mulder M, Moreno-Pérez D, Navarro ML, León-Leal JA, de José MI, Ramos JT, Mellado MJ, González-Tomé MI, Leal M, Muñoz-Fernández MA.

Pediatr Infect Dis J. 2012 Oct;31(10):1048-52.

PMID:
22828644
[PubMed - indexed for MEDLINE]
18.

Evaluation of eight different bioinformatics tools to predict viral tropism in different human immunodeficiency virus type 1 subtypes.

Garrido C, Roulet V, Chueca N, Poveda E, Aguilera A, Skrabal K, Zahonero N, Carlos S, García F, Faudon JL, Soriano V, de Mendoza C.

J Clin Microbiol. 2008 Mar;46(3):887-91. doi: 10.1128/JCM.01611-07. Epub 2008 Jan 16.

PMID:
18199789
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Development and performance of conventional HIV-1 phenotyping (Antivirogram®) and genotype-based calculated phenotyping assay (virco®TYPE HIV-1) on protease and reverse transcriptase genes to evaluate drug resistance.

Pattery T, Verlinden Y, De Wolf H, Nauwelaers D, Van Baelen K, Van Houtte M, Mc Kenna P, Villacian J.

Intervirology. 2012;55(2):138-46. doi: 10.1159/000332013. Epub 2012 Jan 24.

PMID:
22286884
[PubMed - indexed for MEDLINE]
20.

Minority variants of drug-resistant HIV.

Gianella S, Richman DD.

J Infect Dis. 2010 Sep 1;202(5):657-66. doi: 10.1086/655397. Review.

PMID:
20649427
[PubMed - indexed for MEDLINE]
Free PMC Article

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