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jHeatmap: an interactive heatmap viewer for the web.

Deu-Pons J, Schroeder MP, Lopez-Bigas N.

Bioinformatics. 2014 Jun 15;30(12):1757-8. doi: 10.1093/bioinformatics/btu094. Epub 2014 Feb 23.


STAR: an integrated solution to management and visualization of sequencing data.

Wang T, Liu J, Shen L, Tonti-Filippini J, Zhu Y, Jia H, Lister R, Whitaker JW, Ecker JR, Millar AH, Ren B, Wang W.

Bioinformatics. 2013 Dec 15;29(24):3204-10. doi: 10.1093/bioinformatics/btt558. Epub 2013 Sep 27.


Gobe: an interactive, web-based tool for comparative genomic visualization.

Pedersen BS, Tang H, Freeling M.

Bioinformatics. 2011 Apr 1;27(7):1015-6. doi: 10.1093/bioinformatics/btr056. Epub 2011 Feb 3.


Visualization of protein sequence features using JavaScript and SVG with pViz.js.

Mukhyala K, Masselot A.

Bioinformatics. 2014 Dec 1;30(23):3408-9. doi: 10.1093/bioinformatics/btu567. Epub 2014 Aug 21.


Visualization for genomics: the Microbial Genome Viewer.

Kerkhoven R, van Enckevort FH, Boekhorst J, Molenaar D, Siezen RJ.

Bioinformatics. 2004 Jul 22;20(11):1812-4. Epub 2004 Feb 26.


Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web.

Miller CA, Anthony J, Meyer MM, Marth G.

Bioinformatics. 2013 Feb 1;29(3):381-3. doi: 10.1093/bioinformatics/bts677. Epub 2012 Nov 19.


Dalliance: interactive genome viewing on the web.

Down TA, Piipari M, Hubbard TJ.

Bioinformatics. 2011 Mar 15;27(6):889-90. doi: 10.1093/bioinformatics/btr020. Epub 2011 Jan 19.


Phylowood: interactive web-based animations of biogeographic and phylogeographic histories.

Landis MJ, Bedford T.

Bioinformatics. 2014 Jan 1;30(1):123-4. doi: 10.1093/bioinformatics/btt635. Epub 2013 Nov 4.


Web-based visual analysis for high-throughput genomics.

Goecks J, Eberhard C, Too T; Galaxy Team, Nekrutenko A, Taylor J.

BMC Genomics. 2013 Jun 13;14:397. doi: 10.1186/1471-2164-14-397.


A web-based protein interaction network visualizer.

Salazar GA, Meintjes A, Mazandu GK, Rapanoël HA, Akinola RO, Mulder NJ.

BMC Bioinformatics. 2014 May 6;15:129. doi: 10.1186/1471-2105-15-129.


AVIS: AJAX viewer of interactive signaling networks.

Berger SI, Iyengar R, Ma'ayan A.

Bioinformatics. 2007 Oct 15;23(20):2803-5. Epub 2007 Sep 12.


InCHlib - interactive cluster heatmap for web applications.

Skuta C, Bartůněk P, Svozil D.

J Cheminform. 2014 Sep 17;6(1):44. eCollection 2014 Dec.


MetATT: a web-based metabolomics tool for analyzing time-series and two-factor datasets.

Xia J, Sinelnikov IV, Wishart DS.

Bioinformatics. 2011 Sep 1;27(17):2455-6. doi: 10.1093/bioinformatics/btr392. Epub 2011 Jun 27.


INVEX--a web-based tool for integrative visualization of expression data.

Xia J, Lyle NH, Mayer ML, Pena OM, Hancock RE.

Bioinformatics. 2013 Dec 15;29(24):3232-4. doi: 10.1093/bioinformatics/btt562. Epub 2013 Sep 26.


GeneXplorer: an interactive web application for microarray data visualization and analysis.

Rees CA, Demeter J, Matese JC, Botstein D, Sherlock G.

BMC Bioinformatics. 2004 Oct 1;5:141.


jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web.

Smits SA, Ouverney CC.

PLoS One. 2010 Aug 18;5(8):e12267. doi: 10.1371/journal.pone.0012267.


HeatmapGenerator: high performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline.

Khomtchouk BB, Van Booven DJ, Wahlestedt C.

Source Code Biol Med. 2014 Dec 24;9(1):30. doi: 10.1186/s13029-014-0030-2. eCollection 2014.


Brain: biomedical knowledge manipulation.

Croset S, Overington JP, Rebholz-Schuhmann D.

Bioinformatics. 2013 May 1;29(9):1238-9. doi: 10.1093/bioinformatics/btt109. Epub 2013 Mar 16.


Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.

Edmonson MN, Zhang J, Yan C, Finney RP, Meerzaman DM, Buetow KH.

Bioinformatics. 2011 Mar 15;27(6):865-6. doi: 10.1093/bioinformatics/btr032. Epub 2011 Jan 28.


BlastGraph: a comparative genomics tool based on BLAST and graph algorithms.

Ye Y, Wei B, Wen L, Rayner S.

Bioinformatics. 2013 Dec 15;29(24):3222-4. doi: 10.1093/bioinformatics/btt553. Epub 2013 Sep 24.

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