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Results: 1 to 20 of 92

1.

Vobi One: a data processing software package for functional optical imaging.

Takerkart S, Katz P, Garcia F, Roux S, Reynaud A, Chavane F.

Front Neurosci. 2014 Jan 24;8:2. doi: 10.3389/fnins.2014.00002. eCollection 2014.

PMID:
24478623
[PubMed]
Free PMC Article
2.

STSE: Spatio-Temporal Simulation Environment Dedicated to Biology.

Stoma S, Fröhlich M, Gerber S, Klipp E.

BMC Bioinformatics. 2011 Apr 28;12:126. doi: 10.1186/1471-2105-12-126.

PMID:
21527030
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

SIMA: Python software for analysis of dynamic fluorescence imaging data.

Kaifosh P, Zaremba JD, Danielson NB, Losonczy A.

Front Neuroinform. 2014 Sep 23;8:80. doi: 10.3389/fninf.2014.00080. eCollection 2014.

PMID:
25295002
[PubMed]
Free PMC Article
4.

Motmot, an open-source toolkit for realtime video acquisition and analysis.

Straw AD, Dickinson MH.

Source Code Biol Med. 2009 Jul 22;4:5. doi: 10.1186/1751-0473-4-5.

PMID:
19624853
[PubMed]
Free PMC Article
5.

PsychoPy--Psychophysics software in Python.

Peirce JW.

J Neurosci Methods. 2007 May 15;162(1-2):8-13. Epub 2007 Jan 23.

PMID:
17254636
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis.

Wang T, Shao K, Chu Q, Ren Y, Mu Y, Qu L, He J, Jin C, Xia B.

BMC Bioinformatics. 2009 Mar 16;10:83. doi: 10.1186/1471-2105-10-83.

PMID:
19291281
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Python for large-scale electrophysiology.

Spacek M, Blanche T, Swindale N.

Front Neuroinform. 2009 Jan 28;2:9. doi: 10.3389/neuro.11.009.2008. eCollection 2008.

PMID:
19198646
[PubMed]
Free PMC Article
8.

Neo: an object model for handling electrophysiology data in multiple formats.

Garcia S, Guarino D, Jaillet F, Jennings T, Pröpper R, Rautenberg PL, Rodgers CC, Sobolev A, Wachtler T, Yger P, Davison AP.

Front Neuroinform. 2014 Feb 20;8:10. doi: 10.3389/fninf.2014.00010. eCollection 2014.

PMID:
24600386
[PubMed]
Free PMC Article
9.

HDX-analyzer: a novel package for statistical analysis of protein structure dynamics.

Liu S, Liu L, Uzuner U, Zhou X, Gu M, Shi W, Zhang Y, Dai SY, Yuan JS.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S43. doi: 10.1186/1471-2105-12-S1-S43.

PMID:
21342575
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

DataViewer3D: An Open-Source, Cross-Platform Multi-Modal Neuroimaging Data Visualization Tool.

Gouws A, Woods W, Millman R, Morland A, Green G.

Front Neuroinform. 2009 Mar 27;3:9. doi: 10.3389/neuro.11.009.2009. eCollection 2009.

PMID:
19352444
[PubMed]
Free PMC Article
11.

PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools.

O'Callaghan S, De Souza DP, Isaac A, Wang Q, Hodkinson L, Olshansky M, Erwin T, Appelbe B, Tull DL, Roessner U, Bacic A, McConville MJ, Likić VA.

BMC Bioinformatics. 2012 May 30;13:115. doi: 10.1186/1471-2105-13-115.

PMID:
22647087
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators.

Gautier L.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S11. doi: 10.1186/1471-2105-11-S12-S11.

PMID:
21210978
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A processing work-flow for measuring erythrocytes velocity in extended vascular networks from wide field high-resolution optical imaging data.

Deneux T, Takerkart S, Grinvald A, Masson GS, Vanzetta I.

Neuroimage. 2012 Feb 1;59(3):2569-88. doi: 10.1016/j.neuroimage.2011.08.081. Epub 2011 Sep 8.

PMID:
21925275
[PubMed - indexed for MEDLINE]
14.

Large-scale automated image analysis for computational profiling of brain tissue surrounding implanted neuroprosthetic devices using Python.

Rey-Villamizar N, Somasundar V, Megjhani M, Xu Y, Lu Y, Padmanabhan R, Trett K, Shain W, Roysam B.

Front Neuroinform. 2014 Apr 29;8:39. doi: 10.3389/fninf.2014.00039. eCollection 2014.

PMID:
24808857
[PubMed]
Free PMC Article
15.

TREK: an integrated system architecture for intraoperative cone-beam CT-guided surgery.

Uneri A, Schafer S, Mirota DJ, Nithiananthan S, Otake Y, Taylor RH, Gallia GL, Khanna AJ, Lee S, Reh DD, Siewerdsen JH.

Int J Comput Assist Radiol Surg. 2012 Jan;7(1):159-73. doi: 10.1007/s11548-011-0636-7. Epub 2011 Jul 9. Erratum in: Int J Comput Assist Radiol Surg. 2012 Jan;7(1):175. Gallia, G L [added]; Khanna A J [added]; Lee, S [added]; Reh, D D [added].

PMID:
21744085
[PubMed - indexed for MEDLINE]
16.

Tools for loading MEDLINE into a local relational database.

Oliver DE, Bhalotia G, Schwartz AS, Altman RB, Hearst MA.

BMC Bioinformatics. 2004 Oct 7;5:146.

PMID:
15471541
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

pySPACE-a signal processing and classification environment in Python.

Krell MM, Straube S, Seeland A, Wöhrle H, Teiwes J, Metzen JH, Kirchner EA, Kirchner F.

Front Neuroinform. 2013 Dec 24;7:40. doi: 10.3389/fninf.2013.00040. eCollection 2013.

PMID:
24399965
[PubMed]
Free PMC Article
18.

The RUMBA software: tools for neuroimaging data analysis.

Bly BM, Rebbechi D, Hanson SJ, Grasso G.

Neuroinformatics. 2004;2(1):71-100.

PMID:
15067169
[PubMed - indexed for MEDLINE]
19.

Two-Photon Processor and SeNeCA: a freely available software package to process data from two-photon calcium imaging at speeds down to several milliseconds per frame.

Tomek J, Novak O, Syka J.

J Neurophysiol. 2013 Jul;110(1):243-56. doi: 10.1152/jn.00087.2013. Epub 2013 Apr 10.

PMID:
23576700
[PubMed - indexed for MEDLINE]
Free Article
20.

AnyWave: a cross-platform and modular software for visualizing and processing electrophysiological signals.

Colombet B, Woodman M, Bénar CG, Badier JM.

J Neurosci Methods. 2015 Jan 19. pii: S0165-0270(15)00018-7. doi: 10.1016/j.jneumeth.2015.01.017. [Epub ahead of print]

PMID:
25614386
[PubMed - as supplied by publisher]

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