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Items: 1 to 20 of 122

1.

Design and characterization of a 52K SNP chip for goats.

Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Jun Wang, Wang W, Zhang W; International Goat Genome Consortium.

PLoS One. 2014 Jan 22;9(1):e86227. doi: 10.1371/journal.pone.0086227. eCollection 2014. Erratum in: PLoS One. 2016;11(3):e0152632.

2.

The development and characterization of a 60K SNP chip for chicken.

Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH.

BMC Genomics. 2011 May 31;12(1):274. doi: 10.1186/1471-2164-12-274.

3.

Estimation of genomic breeding values for milk yield in UK dairy goats.

Mucha S, Mrode R, MacLaren-Lee I, Coffey M, Conington J.

J Dairy Sci. 2015 Nov;98(11):8201-8. doi: 10.3168/jds.2015-9682. Epub 2015 Sep 3.

4.

High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array.

Bekele WA, Wieckhorst S, Friedt W, Snowdon RJ.

Plant Biotechnol J. 2013 Dec;11(9):1112-25. doi: 10.1111/pbi.12106. Epub 2013 Aug 7.

5.

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.

Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C.

PLoS One. 2012;7(2):e31745. doi: 10.1371/journal.pone.0031745. Epub 2012 Feb 21.

6.

Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracy.

Bolormaa S, Gore K, van der Werf JH, Hayes BJ, Daetwyler HD.

Anim Genet. 2015 Oct;46(5):544-56. doi: 10.1111/age.12340. Epub 2015 Sep 11.

PMID:
26360638
7.

Characterization of linkage disequilibrium, consistency of gametic phase and admixture in Australian and Canadian goats.

Brito LF, Jafarikia M, Grossi DA, Kijas JW, Porto-Neto LR, Ventura RV, Salgorzaei M, Schenkel FS.

BMC Genet. 2015 Jun 25;16:67. doi: 10.1186/s12863-015-0220-1.

8.

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome.

Amaral AJ, Megens HJ, Kerstens HH, Heuven HC, Dibbits B, Crooijmans RP, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Aug 12;10:374. doi: 10.1186/1471-2164-10-374.

9.

An update of the goat genome assembly using dense radiation hybrid maps allows detailed analysis of evolutionary rearrangements in Bovidae.

Du X, Servin B, Womack JE, Cao J, Yu M, Dong Y, Wang W, Zhao S.

BMC Genomics. 2014 Jul 23;15:625. doi: 10.1186/1471-2164-15-625.

10.

Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm.

Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, Wilhelm L, Troggio M, Sosinski B, Aranzana MJ, Arús P, Iezzoni A, Morgante M, Peace C.

PLoS One. 2012;7(4):e35668. doi: 10.1371/journal.pone.0035668. Epub 2012 Apr 20. Erratum in: PLoS One. 2012;7(6). doi:10.1371/annotation/33f1ba92-c304-4757-91aa-555de64a0768.

11.

Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries.

Kumar S, You FM, Cloutier S.

BMC Genomics. 2012 Dec 6;13:684. doi: 10.1186/1471-2164-13-684.

12.

Development and characterization of a high density SNP genotyping assay for cattle.

Matukumalli LK, Lawley CT, Schnabel RD, Taylor JF, Allan MF, Heaton MP, O'Connell J, Moore SS, Smith TP, Sonstegard TS, Van Tassell CP.

PLoS One. 2009;4(4):e5350. doi: 10.1371/journal.pone.0005350. Epub 2009 Apr 24.

13.

Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry.

Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A.

PLoS One. 2012;7(12):e48305. doi: 10.1371/journal.pone.0048305. Epub 2012 Dec 20.

14.

The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus).

Hagen IJ, Billing AM, Rønning B, Pedersen SA, Pärn H, Slate J, Jensen H.

Mol Ecol Resour. 2013 May;13(3):429-39. doi: 10.1111/1755-0998.12088. Epub 2013 Mar 9.

PMID:
23480404
15.

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.

Stothard P, Choi JW, Basu U, Sumner-Thomson JM, Meng Y, Liao X, Moore SS.

BMC Genomics. 2011 Nov 15;12:559. doi: 10.1186/1471-2164-12-559.

16.

Hot topic: performance of bovine high-density genotyping platforms in Holsteins and Jerseys.

Rincon G, Weber KL, Eenennaam AL, Golden BL, Medrano JF.

J Dairy Sci. 2011 Dec;94(12):6116-21. doi: 10.3168/jds.2011-4764.

PMID:
22118099
17.

Genetic variants and effects on milk traits of the caprine paired-like homeodomain transcription factor 2 (PITX2) gene in dairy goats.

Zhao H, Wu X, Cai H, Pan C, Lei C, Chen H, Lan X.

Gene. 2013 Dec 15;532(2):203-10. doi: 10.1016/j.gene.2013.09.062. Epub 2013 Sep 25.

PMID:
24076438
18.

Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh).

Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M.

PLoS One. 2014 Oct 10;9(10):e110377. doi: 10.1371/journal.pone.0110377. eCollection 2014.

19.

SNP discovery in swine by reduced representation and high throughput pyrosequencing.

Wiedmann RT, Smith TP, Nonneman DJ.

BMC Genet. 2008 Dec 4;9:81. doi: 10.1186/1471-2156-9-81.

20.

Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates.

Khatkar MS, Hobbs M, Neuditschko M, Sölkner J, Nicholas FW, Raadsma HW.

BMC Bioinformatics. 2010 Apr 7;11:171. doi: 10.1186/1471-2105-11-171.

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