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Items: 1 to 20 of 96

1.

Identifying proteins in zebrafish embryos using spectral libraries generated from dissected adult organs and tissues.

van der Plas-Duivesteijn SJ, Mohammed Y, Dalebout H, Meijer A, Botermans A, Hoogendijk JL, Henneman AA, Deelder AM, Spaink HP, Palmblad M.

J Proteome Res. 2014 Mar 7;13(3):1537-44. doi: 10.1021/pr4010585. Epub 2014 Feb 5.

PMID:
24460240
2.

EBP, a program for protein identification using multiple tandem mass spectrometry datasets.

Price TS, Lucitt MB, Wu W, Austin DJ, Pizarro A, Yocum AK, Blair IA, FitzGerald GA, Grosser T.

Mol Cell Proteomics. 2007 Mar;6(3):527-36. Epub 2006 Dec 12.

3.

Enhanced peptide quantification using spectral count clustering and cluster abundance.

Lee S, Kwon MS, Lee HJ, Paik YK, Tang H, Lee JK, Park T.

BMC Bioinformatics. 2011 Oct 28;12:423. doi: 10.1186/1471-2105-12-423.

4.

Proteome profile of zebrafish Danio rerio olfactory bulb based on two-dimensional gel electrophoresis matrix-assisted laser desorption/ionization MS/MS analysis.

Singh SK, Saxena S, Meena Lakshmi MG, Saxena P, Idris MM.

Zebrafish. 2011 Dec;8(4):183-9. doi: 10.1089/zeb.2011.0711.

PMID:
22181661
5.

Expanding the zebrafish embryo proteome using multiple fractionation approaches and tandem mass spectrometry.

Lößner C, Wee S, Ler SG, Li RH, Carney T, Blackstock W, Gunaratne J.

Proteomics. 2012 Jun;12(11):1879-82. doi: 10.1002/pmic.201100576.

PMID:
22653788
6.

Molecular characterization and functions of zebrafish ABCC2 in cellular efflux of heavy metals.

Long Y, Li Q, Zhong S, Wang Y, Cui Z.

Comp Biochem Physiol C Toxicol Pharmacol. 2011 May;153(4):381-91. doi: 10.1016/j.cbpc.2011.01.002. Epub 2011 Jan 23.

PMID:
21266201
7.

Extending the coverage of spectral libraries: a neighbor-based approach to predicting intensities of peptide fragmentation spectra.

Ji C, Arnold RJ, Sokoloski KJ, Hardy RW, Tang H, Radivojac P.

Proteomics. 2013 Mar;13(5):756-65. doi: 10.1002/pmic.201100670. Epub 2013 Feb 4.

8.

Spectrum-to-spectrum searching using a proteome-wide spectral library.

Yen CY, Houel S, Ahn NG, Old WM.

Mol Cell Proteomics. 2011 Jul;10(7):M111.007666. doi: 10.1074/mcp.M111.007666. Epub 2011 Apr 30.

9.

Proteomics of early zebrafish embryos.

Link V, Shevchenko A, Heisenberg CP.

BMC Dev Biol. 2006 Jan 13;6:1.

10.

Identifying sources of tick blood meals using unidentified tandem mass spectral libraries.

Önder Ö, Shao W, Kemps BD, Lam H, Brisson D.

Nat Commun. 2013;4:1746. doi: 10.1038/ncomms2730.

11.

Proteome analysis of a single zebrafish embryo using three different digestion strategies coupled with liquid chromatography-tandem mass spectrometry.

Lin Y, Chen Y, Yang X, Xu D, Liang S.

Anal Biochem. 2009 Nov 15;394(2):177-85. doi: 10.1016/j.ab.2009.07.034. Epub 2009 Jul 28.

PMID:
19643073
12.

Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics.

Lam H, Aebersold R.

Methods. 2011 Aug;54(4):424-31. doi: 10.1016/j.ymeth.2011.01.007. Epub 2011 Jan 28. Review.

PMID:
21277371
13.

Denoising peptide tandem mass spectra for spectral libraries: a Bayesian approach.

Shao W, Lam H.

J Proteome Res. 2013 Jul 5;12(7):3223-32. doi: 10.1021/pr400080b. Epub 2013 Jun 6.

PMID:
23675732
14.

Using whole mount in situ hybridization to examine thyroid hormone deiodinase expression in embryonic and larval zebrafish: a tool for examining OH-BDE toxicity to early life stages.

Dong W, Macaulay LJ, Kwok KW, Hinton DE, Stapleton HM.

Aquat Toxicol. 2013 May 15;132-133:190-9. doi: 10.1016/j.aquatox.2013.02.008. Epub 2013 Mar 4.

15.

Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.

Frank AM, Monroe ME, Shah AR, Carver JJ, Bandeira N, Moore RJ, Anderson GA, Smith RD, Pevzner PA.

Nat Methods. 2011 May 15;8(7):587-91. doi: 10.1038/nmeth.1609.

16.

Differential tissue-specific distribution of transcripts for the duplicated fatty acid-binding protein 10 (fabp10) genes in embryos, larvae and adult zebrafish (Danio rerio).

Venkatachalam AB, Thisse C, Thisse B, Wright JM.

FEBS J. 2009 Nov;276(22):6787-97. doi: 10.1111/j.1742-4658.2009.07393.x. Epub 2009 Oct 16.

17.

Osteocalcin and matrix Gla protein in zebrafish (Danio rerio) and Senegal sole (Solea senegalensis): comparative gene and protein expression during larval development through adulthood.

Gavaia PJ, Simes DC, Ortiz-Delgado JB, Viegas CS, Pinto JP, Kelsh RN, Sarasquete MC, Cancela ML.

Gene Expr Patterns. 2006 Aug;6(6):637-52. Epub 2006 Feb 2.

PMID:
16458082
18.
19.

Protease specificity profiling by tandem mass spectrometry using proteome-derived peptide libraries.

Schilling O, auf dem Keller U, Overall CM.

Methods Mol Biol. 2011;753:257-72. doi: 10.1007/978-1-61779-148-2_17.

PMID:
21604128
20.

Tandem mass spectrometry spectral libraries and library searching.

Deutsch EW.

Methods Mol Biol. 2011;696:225-32. doi: 10.1007/978-1-60761-987-1_13.

PMID:
21063950
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