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Results: 1 to 20 of 81

1.

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships.

McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, Graeber TG, Sonnenburg JL, Horvath S, Huttenhower C, McGovern DP, Fornace AJ Jr, Borneman J, Braun J.

Microbiome. 2013 Jun 5;1(1):17. doi: 10.1186/2049-2618-1-17.

PMID:
24450808
[PubMed]
Free PMC Article
2.

HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota.

McHardy IH, Li X, Tong M, Ruegger P, Jacobs J, Borneman J, Anton P, Braun J.

Microbiome. 2013 Oct 12;1(1):26. doi: 10.1186/2049-2618-1-26.

PMID:
24451087
[PubMed]
Free PMC Article
3.

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism.

Tong M, McHardy I, Ruegger P, Goudarzi M, Kashyap PC, Haritunians T, Li X, Graeber TG, Schwager E, Huttenhower C, Fornace AJ Jr, Sonnenburg JL, McGovern DP, Borneman J, Braun J.

ISME J. 2014 Nov;8(11):2193-206. doi: 10.1038/ismej.2014.64. Epub 2014 Apr 29.

PMID:
24781901
[PubMed - in process]
4.

Metabolic reconstruction for metagenomic data and its application to the human microbiome.

Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C.

PLoS Comput Biol. 2012;8(6):e1002358. doi: 10.1371/journal.pcbi.1002358. Epub 2012 Jun 13.

PMID:
22719234
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.

Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C.

Genome Biol. 2012 Apr 16;13(9):R79. doi: 10.1186/gb-2012-13-9-r79.

PMID:
23013615
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A comparison of the microbiome and the metabolome of different regions of the equine hindgut.

Dougal K, Harris PA, Edwards A, Pachebat JA, Blackmore TM, Worgan HJ, Newbold CJ.

FEMS Microbiol Ecol. 2012 Dec;82(3):642-52. doi: 10.1111/j.1574-6941.2012.01441.x. Epub 2012 Jul 23.

PMID:
22757649
[PubMed - indexed for MEDLINE]
7.

Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults.

Weir TL, Manter DK, Sheflin AM, Barnett BA, Heuberger AL, Ryan EP.

PLoS One. 2013 Aug 6;8(8):e70803. doi: 10.1371/journal.pone.0070803. Print 2013.

PMID:
23940645
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease.

Raman M, Ahmed I, Gillevet PM, Probert CS, Ratcliffe NM, Smith S, Greenwood R, Sikaroodi M, Lam V, Crotty P, Bailey J, Myers RP, Rioux KP.

Clin Gastroenterol Hepatol. 2013 Jul;11(7):868-75.e1-3. doi: 10.1016/j.cgh.2013.02.015. Epub 2013 Feb 27.

PMID:
23454028
[PubMed - indexed for MEDLINE]
9.

The microbiome in inflammatory bowel disease: current status and the future ahead.

Kostic AD, Xavier RJ, Gevers D.

Gastroenterology. 2014 May;146(6):1489-99. doi: 10.1053/j.gastro.2014.02.009. Epub 2014 Feb 19. Review.

PMID:
24560869
[PubMed - indexed for MEDLINE]
10.

Correlation network analysis reveals relationships between diet-induced changes in human gut microbiota and metabolic health.

Kelder T, Stroeve JH, Bijlsma S, Radonjic M, Roeselers G.

Nutr Diabetes. 2014 Jun 30;4:e122. doi: 10.1038/nutd.2014.18.

PMID:
24979151
[PubMed]
Free PMC Article
11.

Metabolomics approaches for characterizing metabolic interactions between host and its commensal microbes.

Xie G, Zhang S, Zheng X, Jia W.

Electrophoresis. 2013 Oct;34(19):2787-98. doi: 10.1002/elps.201300017. Epub 2013 Aug 16. Review.

PMID:
23775228
[PubMed - indexed for MEDLINE]
12.

Effects of probiotics on gut microbiota: mechanisms of intestinal immunomodulation and neuromodulation.

Hemarajata P, Versalovic J.

Therap Adv Gastroenterol. 2013 Jan;6(1):39-51. doi: 10.1177/1756283X12459294.

PMID:
23320049
[PubMed]
Free PMC Article
13.

Altered tissue metabolites correlate with microbial dysbiosis in colorectal adenomas.

Nugent JL, McCoy AN, Addamo CJ, Jia W, Sandler RS, Keku TO.

J Proteome Res. 2014 Apr 4;13(4):1921-9. doi: 10.1021/pr4009783. Epub 2014 Mar 21.

PMID:
24601673
[PubMed - indexed for MEDLINE]
14.

Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome.

Jones BV, Sun F, Marchesi JR.

BMC Genomics. 2010 Jan 19;11:46. doi: 10.1186/1471-2164-11-46.

PMID:
20085629
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Microbiome and cancer.

Ohtani N.

Semin Immunopathol. 2014 Nov 18. [Epub ahead of print]

PMID:
25404117
[PubMed - as supplied by publisher]
16.

Characterisation of the faecal metabolome and microbiome of Thoroughbred racehorses.

Proudman CJ, Hunter JO, Darby AC, Escalona EE, Batty C, Turner C.

Equine Vet J. 2014 Jul 21. doi: 10.1111/evj.12324. [Epub ahead of print]

PMID:
25041526
[PubMed - as supplied by publisher]
17.

Intestinal colonization: how key microbial players become established in this dynamic process: microbial metabolic activities and the interplay between the host and microbes.

El Aidy S, Van den Abbeele P, Van de Wiele T, Louis P, Kleerebezem M.

Bioessays. 2013 Oct;35(10):913-23. doi: 10.1002/bies.201300073. Epub 2013 Aug 15. Review.

PMID:
23946088
[PubMed - indexed for MEDLINE]
18.

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease.

Walker AW, Sanderson JD, Churcher C, Parkes GC, Hudspith BN, Rayment N, Brostoff J, Parkhill J, Dougan G, Petrovska L.

BMC Microbiol. 2011 Jan 10;11:7. doi: 10.1186/1471-2180-11-7.

PMID:
21219646
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

Schwartz S, Friedberg I, Ivanov IV, Davidson LA, Goldsby JS, Dahl DB, Herman D, Wang M, Donovan SM, Chapkin RS.

Genome Biol. 2012 Apr 30;13(4):r32. doi: 10.1186/gb-2012-13-4-r32.

PMID:
22546241
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model.

Van den Abbeele P, Belzer C, Goossens M, Kleerebezem M, De Vos WM, Thas O, De Weirdt R, Kerckhof FM, Van de Wiele T.

ISME J. 2013 May;7(5):949-61. doi: 10.1038/ismej.2012.158. Epub 2012 Dec 13.

PMID:
23235287
[PubMed - indexed for MEDLINE]
Free PMC Article

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