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Items: 1 to 20 of 108

1.

Array-representation Integration Factor Method for High-dimensional Systems.

Wang D, Zhang L, Nie Q.

J Comput Phys. 2014 Feb 1;258. doi: 10.1016/j.jcp.2013.11.002.

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Compact integration factor methods in high spatial dimensions.

Nie Q, Wan FY, Zhang YT, Liu XF.

J Comput Phys. 2008;227(10):5238-5255.

5.

Operator Splitting Implicit Integration Factor Methods for Stiff Reaction-Diffusion-Advection Systems.

Zhao S, Ovadia J, Liu X, Zhang YT, Nie Q.

J Comput Phys. 2011 Jul;230(15):5996-6009.

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Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
8.

How accurate are the nonlinear chemical Fokker-Planck and chemical Langevin equations?

Grima R, Thomas P, Straube AV.

J Chem Phys. 2011 Aug 28;135(8):084103. doi: 10.1063/1.3625958.

PMID:
21895155
11.

A combined explicit-implicit method for high accuracy reaction path integration.

Burger SK, Yang W.

J Chem Phys. 2006 Jun 14;124(22):224102.

PMID:
16784258
12.

A Robust and Efficient Method for Steady State Patterns in Reaction-Diffusion Systems.

Lo WC, Chen L, Wang M, Nie Q.

J Comput Phys. 2012 Jun 1;231(15):5062-5077.

13.

Computing generalized Langevin equations and generalized Fokker-Planck equations.

Darve E, Solomon J, Kia A.

Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):10884-9. doi: 10.1073/pnas.0902633106. Epub 2009 Jun 19.

14.

Adaptive macro finite elements for the numerical solution of monodomain equations in cardiac electrophysiology.

Heidenreich EA, Ferrero JM, Doblaré M, Rodríguez JF.

Ann Biomed Eng. 2010 Jul;38(7):2331-45. doi: 10.1007/s10439-010-9997-2. Epub 2010 Mar 18.

PMID:
20238165
15.

Direct solution of the Chemical Master Equation using quantized tensor trains.

Kazeev V, Khammash M, Nip M, Schwab C.

PLoS Comput Biol. 2014 Mar 13;10(3):e1003359. doi: 10.1371/journal.pcbi.1003359. eCollection 2014 Mar.

18.

On the Maxwell-Stefan approach to diffusion: a general resolution in the transient regime for one-dimensional systems.

Leonardi E, Angeli C.

J Phys Chem B. 2010 Jan 14;114(1):151-64. doi: 10.1021/jp900760c.

PMID:
20000727
19.

Multi-dimensional, mesoscopic Monte Carlo simulations of inhomogeneous reaction-drift-diffusion systems on graphics-processing units.

Vigelius M, Meyer B.

PLoS One. 2012;7(4):e33384. doi: 10.1371/journal.pone.0033384. Epub 2012 Apr 10.

20.

A finite volume method for stochastic integrate-and-fire models.

Marpeau F, Barua A, Josić K.

J Comput Neurosci. 2009 Jun;26(3):445-57. doi: 10.1007/s10827-008-0121-7. Epub 2008 Dec 9.

PMID:
19067147
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