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Results: 1 to 20 of 100

1.

A phylogenetic model for understanding the effect of gene duplication on cancer progression.

Ma Q, Reeves JH, Liberles DA, Yu L, Chang Z, Zhao J, Cui J, Xu Y, Liu L.

Nucleic Acids Res. 2014 Mar;42(5):2870-8. doi: 10.1093/nar/gkt1320. Epub 2013 Dec 25.

PMID:
24371277
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Unified modeling of gene duplication, loss, and coalescence using a locus tree.

Rasmussen MD, Kellis M.

Genome Res. 2012 Apr;22(4):755-65. doi: 10.1101/gr.123901.111. Epub 2012 Jan 23.

PMID:
22271778
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach.

Rivera AS, Pankey MS, Plachetzki DC, Villacorta C, Syme AE, Serb JM, Omilian AR, Oakley TH.

BMC Evol Biol. 2010 Apr 30;10:123. doi: 10.1186/1471-2148-10-123.

PMID:
20433736
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A Bayesian model for gene family evolution.

Liu L, Yu L, Kalavacharla V, Liu Z.

BMC Bioinformatics. 2011 Nov 1;12:426. doi: 10.1186/1471-2105-12-426.

PMID:
22044581
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.

Ness RW, Graham SW, Barrett SC.

Mol Biol Evol. 2011 Nov;28(11):3009-18. doi: 10.1093/molbev/msr119. Epub 2011 Jun 1.

PMID:
21633114
[PubMed - indexed for MEDLINE]
Free Article
6.

Genome-scale coestimation of species and gene trees.

Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.

Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6.

PMID:
23132911
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes.

Lin Y, Hu F, Tang J, Moret BM.

Pac Symp Biocomput. 2013:285-96.

PMID:
23424133
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications.

Lu J, Peatman E, Tang H, Lewis J, Liu Z.

BMC Genomics. 2012 Jun 15;13:246. doi: 10.1186/1471-2164-13-246.

PMID:
22702965
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Mathematical modeling for functional divergence after gene duplication.

Gu X.

J Comput Biol. 2001;8(3):221-34.

PMID:
11535174
[PubMed - indexed for MEDLINE]
10.

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

Górecki P, Burleigh GJ, Eulenstein O.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S15. doi: 10.1186/1471-2105-12-S1-S15.

PMID:
21342544
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Dating and functional characterization of duplicated genes in the apple (Malus domestica Borkh.) by analyzing EST data.

Sanzol J.

BMC Plant Biol. 2010 May 14;10:87. doi: 10.1186/1471-2229-10-87.

PMID:
20470375
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.

Bansal MS, Burleigh JG, Eulenstein O.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S42. doi: 10.1186/1471-2105-11-S1-S42.

PMID:
20122216
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

DrML: probabilistic modeling of gene duplications.

Górecki P, Eulenstein O.

J Comput Biol. 2014 Jan;21(1):89-98. doi: 10.1089/cmb.2013.0078. Epub 2013 Sep 27.

PMID:
24073895
[PubMed - indexed for MEDLINE]
14.

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.

McCormack JE, Huang H, Knowles LL.

Syst Biol. 2009 Oct;58(5):501-8. doi: 10.1093/sysbio/syp045. Epub 2009 Aug 20.

PMID:
20525604
[PubMed - indexed for MEDLINE]
15.

Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction network.

Doherty A, Alvarez-Ponce D, McInerney JO.

Mol Biol Evol. 2012 Nov;29(11):3563-73. doi: 10.1093/molbev/mss165. Epub 2012 Jun 21.

PMID:
22723304
[PubMed - indexed for MEDLINE]
Free Article
16.

Toward a general model for the evolutionary dynamics of gene duplicates.

Konrad A, Teufel AI, Grahnen JA, Liberles DA.

Genome Biol Evol. 2011;3:1197-209. doi: 10.1093/gbe/evr093. Epub 2011 Sep 13.

PMID:
21920903
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Multiple origins and rapid evolution of duplicated mitochondrial genes in parthenogenetic geckos (Heteronotia binoei; Squamata, Gekkonidae).

Fujita MK, Boore JL, Moritz C.

Mol Biol Evol. 2007 Dec;24(12):2775-86. Epub 2007 Oct 5.

PMID:
17921488
[PubMed - indexed for MEDLINE]
Free Article
18.

Snake mitochondrial genomes: phylogenetic relationships and implications of extended taxon sampling for interpretations of mitogenomic evolution.

Douglas DA, Gower DJ.

BMC Genomics. 2010 Jan 7;11:14. doi: 10.1186/1471-2164-11-14.

PMID:
20055998
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Inferring angiosperm phylogeny from EST data with widespread gene duplication.

Sanderson MJ, McMahon MM.

BMC Evol Biol. 2007 Feb 8;7 Suppl 1:S3.

PMID:
17288576
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Natural history and evolutionary principles of gene duplication in fungi.

Wapinski I, Pfeffer A, Friedman N, Regev A.

Nature. 2007 Sep 6;449(7158):54-61.

PMID:
17805289
[PubMed - indexed for MEDLINE]

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