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Automated identification and location analysis of marked stem cells colonies in optical microscopy images.

Paduano V, Tagliaferri D, Falco G, Ceccarelli M.

PLoS One. 2013 Dec 9;8(12):e80776. doi: 10.1371/journal.pone.0080776. eCollection 2013.


Retinoic Acid Specifically Enhances Embryonic Stem Cell Metastate Marked by Zscan4.

Tagliaferri D, De Angelis MT, Russo NA, Marotta M, Ceccarelli M, Del Vecchio L, De Felice M, Falco G.

PLoS One. 2016 Feb 3;11(2):e0147683. doi: 10.1371/journal.pone.0147683. eCollection 2016.


Identification of a novel gene signature of ES cells self-renewal fluctuation through system-wide analysis.

Cerulo L, Tagliaferri D, Marotta P, Zoppoli P, Russo F, Mazio C, DeFelice M, Ceccarelli M, Falco G.

PLoS One. 2014 Jan 2;9(1):e83235. doi: 10.1371/journal.pone.0083235. eCollection 2014.


Emergence of undifferentiated colonies from mouse embryonic stem cells undergoing differentiation by retinoic acid treatment.

Sharova LV, Sharov AA, Piao Y, Stagg CA, Amano T, Qian Y, Dudekula D, Schlessinger D, Ko MS.

In Vitro Cell Dev Biol Anim. 2016 May;52(5):616-24. doi: 10.1007/s11626-016-0013-5. Epub 2016 Apr 29.


Human testis-derived embryonic stem cell-like cells are not pluripotent, but possess potential of mesenchymal progenitors.

Chikhovskaya JV, Jonker MJ, Meissner A, Breit TM, Repping S, van Pelt AM.

Hum Reprod. 2012 Jan;27(1):210-21. doi: 10.1093/humrep/der383. Epub 2011 Nov 15.


Dual functions of T-box 3 (Tbx3) in the control of self-renewal and extraembryonic endoderm differentiation in mouse embryonic stem cells.

Lu R, Yang A, Jin Y.

J Biol Chem. 2011 Mar 11;286(10):8425-36. doi: 10.1074/jbc.M110.202150. Epub 2010 Dec 28.


Image-based quantification and mathematical modeling of spatial heterogeneity in ESC colonies.

Herberg M, Zerjatke T, de Back W, Glauche I, Roeder I.

Cytometry A. 2015 Jun;87(6):481-90. doi: 10.1002/cyto.a.22598. Epub 2015 Jan 20.


Ly-1 antibody reactive clone is an important nucleolar protein for control of self-renewal and differentiation in embryonic stem cells.

Li H, Wang B, Yang A, Lu R, Wang W, Zhou Y, Shi G, Kwon SW, Zhao Y, Jin Y.

Stem Cells. 2009 Jun;27(6):1244-54. doi: 10.1002/stem.55.


Regulation of embryonic stem cell self-renewal and pluripotency by Foxd3.

Liu Y, Labosky PA.

Stem Cells. 2008 Oct;26(10):2475-84. doi: 10.1634/stemcells.2008-0269. Epub 2008 Jul 24.


Embryonic stem cell-specific miR302-367 cluster: human gene structure and functional characterization of its core promoter.

Barroso-delJesus A, Romero-López C, Lucena-Aguilar G, Melen GJ, Sanchez L, Ligero G, Berzal-Herranz A, Menendez P.

Mol Cell Biol. 2008 Nov;28(21):6609-19. doi: 10.1128/MCB.00398-08. Epub 2008 Aug 25.


Apoptosis-related gene expression profiles of mouse ESCs and maGSCs: role of Fgf4 and Mnda in pluripotent cell responses to genotoxicity.

Khromov T, Dressel R, Siamishi I, Nolte J, Opitz L, Engel W, Pantakani DV.

PLoS One. 2012;7(11):e48869. doi: 10.1371/journal.pone.0048869. Epub 2012 Nov 7.


Patterning pluripotency in embryonic stem cells.

Zhang YS, Sevilla A, Wan LQ, Lemischka IR, Vunjak-Novakovic G.

Stem Cells. 2013 Sep;31(9):1806-15. doi: 10.1002/stem.1468.


Dynamic status of REST in the mouse ESC pluripotency network.

Singh SK, Veo BL, Kagalwala MN, Shi W, Liang S, Majumder S.

PLoS One. 2012;7(8):e43659. doi: 10.1371/journal.pone.0043659. Epub 2012 Aug 28.


Nucleolin maintains embryonic stem cell self-renewal by suppression of p53 protein-dependent pathway.

Yang A, Shi G, Zhou C, Lu R, Li H, Sun L, Jin Y.

J Biol Chem. 2011 Dec 16;286(50):43370-82. doi: 10.1074/jbc.M111.225185. Epub 2011 Oct 19.


Identification and characterization of side population cells in embryonic stem cell cultures.

Vieyra DS, Rosen A, Goodell MA.

Stem Cells Dev. 2009 Oct;18(8):1155-66. doi: 10.1089/scd.2008.0391.


Comparative transcriptional profiling of two human embryonic stem cell lines.

Rao RR, Calhoun JD, Qin X, Rekaya R, Clark JK, Stice SL.

Biotechnol Bioeng. 2004 Nov 5;88(3):273-86.


Correlation of murine embryonic stem cell gene expression profiles with functional measures of pluripotency.

Palmqvist L, Glover CH, Hsu L, Lu M, Bossen B, Piret JM, Humphries RK, Helgason CD.

Stem Cells. 2005 May;23(5):663-80.


Hypocapnia leads to enhanced expression of pluripotency and meso-endodermal differentiation genes in mouse embryonic stem cells.

Jyoti S, Tandon S.

Exp Cell Res. 2014 Apr 1;322(2):389-401. doi: 10.1016/j.yexcr.2014.02.008. Epub 2014 Feb 18.


Retinoic acid maintains self-renewal of murine embryonic stem cells via a feedback mechanism.

Wang R, Liang J, Yu HM, Liang H, Shi YJ, Yang HT.

Differentiation. 2008 Nov;76(9):931-45. doi: 10.1111/j.1432-0436.2008.00272.x. Epub 2008 Jul 1.


Genome-wide gene expression analysis in mouse embryonic stem cells.

Sainz J, García-Alcalde F, Blanco A, Concha A.

Int J Dev Biol. 2011;55(10-12):995-1006. doi: 10.1387/ijdb.103123js.

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